Os10g0365200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0365200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.18 | 0.54 | 7.36 | 2.49 | 1.85 | -1.85 | -0.765 | 2.8 | 0.694 | 16.6 | 24.53 | 4690 | -- | -- |
| 132.06 | 0.535 | 7.4 | 1.91 | 1.74 | -1.6 | -0.875 | -- | 0.771 | 16.6 | 22.06 | 5704 | -- | -- |
| 133.36 | 0.538 | 7.37 | 2.28 | 1.84 | -1.72 | -- | 1.59 | 0.763 | 16.6 | 22.89 | 4794 | -- | -- |
| 133.92 | 0.539 | 7.4 | 1.9 | 1.74 | -1.6 | -- | -- | 0.774 | 16.5 | 21.93 | 5742 | -- | -- |
| 290.15 | 0.793 | 7.33 | 2.44 | -- | -1.87 | -- | 1.89 | 0.865 | -- | 22.74 | 2719 | -- | -- |
| 217.44 | 0.691 | 7.48 | 1.19 | 1.83 | -- | -0.659 | -- | 0.411 | 16.5 | -- | -- | -- | -- |
| 218.6 | 0.692 | 7.48 | 1.18 | 1.82 | -- | -- | -- | 0.407 | 16.4 | -- | -- | -- | -- |
| 291.31 | 0.795 | 7.4 | 1.85 | -- | -1.75 | -- | -- | 0.668 | -- | 23.14 | 5577 | -- | -- |
| 215.23 | 0.683 | 7.44 | -- | 1.67 | -1.17 | -- | -- | 0.562 | 16.6 | 23.21 | 5611 | -- | -- |
| 396.43 | 0.93 | 7.47 | 1.11 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 255.52 | 0.748 | 7.51 | -- | 1.8 | -- | -- | -- | 0.275 | 16.4 | -- | -- | -- | -- |
| 357 | 0.88 | 7.51 | -- | -- | -1.2 | -- | -- | 0.145 | -- | 28.1 | 5618 | -- | -- |
| 429.04 | 0.967 | 7.49 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 128.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 4 | 128.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 11 | 130.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 12 | 130.36 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 23 | 130.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 24 | 131.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 25 | 131.00 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 34 | 131.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 36 | 131.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 39 | 131.06 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 138 | 132.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 159 | 132.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 175 | 132.23 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 179 | 132.31 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 182 | 132.36 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 183 | 132.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 185 | 132.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 187 | 132.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 204 | 132.62 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 13 |
| 212 | 132.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 233 | 132.90 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 234 | 132.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 242 | 132.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 253 | 133.07 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 265 | 133.11 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 282 | 133.15 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 297 | 133.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 329 | 133.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 340 | 133.45 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 357 | 133.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 393 | 133.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 395 | 133.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 8 |
| 419 | 133.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 463 | 134.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 464 | 134.11 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 467 | 134.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 473 | 134.13 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 523 | 134.26 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 528 | 134.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 604 | 134.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 655 | 134.54 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 735 | 134.59 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 748 | 134.63 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 807 | 134.73 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 906 | 134.76 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 917 | 134.80 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 919 | 134.81 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |