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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0360600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0437) R2 : 0.8
β1 : -1.18 (0.217) R2dD : 0.0309 R2D : -0.13
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.479 (0.0949) R2dE : 0.017 R2E : -0.0564
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.38 (0.703) R2dD*E : 0.0862 R2D*E : -0.0432
γ1 : 2.86 (0.11) R2dN8 : 0.676 R2N8 : 0.735
σ : 0.739
deviance : 251.75
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.3
memory length : 798
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.5
open length of G : 0.717

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.72 0.747 3.08 -1.15 0.0916 0.466 -0.141 -6.17 2.87 6.73 25.33 811 21.2 1.03
287.49 0.79 2.84 1.16 0.31 -0.665 -1.3 -- 3.77 5.99 19.9 47520 23.3 2.08
252.67 0.74 3.08 -1.17 0.0915 0.467 -- -6.22 2.87 6.59 25.33 811 21.2 1.02
291.31 0.795 2.83 1.11 0.309 -0.672 -- -- 3.8 5.72 19.96 47520 0.584 0.624
251.75 0.739 3.07 -1.18 -- 0.479 -- -6.38 2.86 -- 25.3 798 21.5 0.717
294.2 0.804 2.91 0.302 0.305 -- -1.35 -- 3.46 5.42 -- -- -- --
298.63 0.809 2.91 0.3 0.301 -- -- -- 3.47 5.95 -- -- -- --
296.27 0.802 2.84 1.09 -- -0.649 -- -- 3.79 -- 20 47520 0.683 0.0464
300.27 0.807 2.92 -- 0.304 0.138 -- -- 3.41 5.94 16.4 47520 23.5 0.73
303.33 0.814 2.91 0.308 -- -- -- -- 3.47 -- -- -- -- --
300.99 0.812 2.92 -- 0.306 -- -- -- 3.43 5.9 -- -- -- --
304.16 0.812 2.92 -- -- 0.248 -- -- 3.43 -- 9.126 47520 0.0166 0.283
305.84 0.816 2.92 -- -- -- -- -- 3.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.38 temperature 25 720 > th dose independent rect. 21 1
2 263.09 temperature 25 720 > th dose dependent rect. 21 1
4 264.79 temperature 25 10 > th dose independent rect. 1 8
5 264.99 temperature 25 720 > th dose independent rect. 19 12
9 265.77 temperature 25 720 > th dose independent rect. 19 10
27 267.27 temperature 25 10 > th dose independent rect. 21 12
30 267.30 temperature 25 720 < th dose independent rect. 19 9
46 267.87 temperature 25 720 < th dose independent rect. 19 12
47 267.88 temperature 25 720 < th dose independent rect. 18 14
69 268.55 temperature 25 10 > th dose independent rect. 4 3
72 268.72 temperature 25 10 > th dose independent sin 8 NA
87 269.70 temperature 25 10 > th dose independent rect. 19 14
90 269.86 temperature 25 720 > th dose dependent rect. 19 12
97 269.99 temperature 25 720 > th dose dependent rect. 19 6
101 270.08 temperature 25 1440 < th dose dependent rect. 13 2
104 270.23 temperature 25 720 > th dose independent sin 11 NA
110 270.32 temperature 25 10 < th dose independent sin 8 NA
113 270.34 temperature 25 720 < th dose independent sin 11 NA
127 270.56 temperature 25 720 > th dose dependent rect. 19 10
135 270.75 temperature 20 4320 > th dose independent rect. 21 5
148 271.04 temperature 20 4320 < th dose independent rect. 21 5
151 271.07 temperature 20 4320 < th dose independent rect. 1 1
226 271.86 temperature 20 4320 > th dose independent sin 12 NA
233 271.88 temperature 20 4320 < th dose independent sin 13 NA
292 272.13 temperature 25 270 > th dose independent rect. 24 8
316 272.20 temperature 20 4320 < th dose dependent rect. 1 1
322 272.23 radiation 10 720 < th dose dependent rect. 10 6
332 272.27 atmosphere 1005 270 > th dose dependent rect. 24 7
341 272.32 radiation 10 720 < th dose dependent rect. 12 4
345 272.33 temperature 25 1440 < th dose dependent rect. 12 8
376 272.44 temperature 20 1440 < th dose independent rect. 5 1
380 272.45 temperature 20 1440 > th dose independent rect. 5 1
407 272.56 radiation 1 90 < th dose independent rect. 8 8
458 272.72 radiation 1 720 < th dose independent rect. 12 4
484 272.81 radiation 1 90 < th dose independent rect. 12 4
497 272.84 temperature 25 10 > th dose independent rect. 19 16
531 272.91 temperature 15 4320 > th dose dependent rect. 1 1
551 272.96 temperature 20 1440 > th dose dependent rect. 6 1
554 272.97 temperature 30 14400 > th dose dependent rect. 18 1
597 273.02 temperature 25 4320 < th dose dependent rect. 20 10
607 273.04 temperature 25 4320 < th dose dependent rect. 18 12
717 273.19 temperature 20 270 > th dose dependent rect. 24 7
744 273.23 temperature 20 4320 < th dose dependent rect. 4 1
775 273.27 temperature 15 4320 > th dose dependent rect. 24 6
783 273.28 temperature 15 4320 > th dose dependent rect. 4 1
791 273.30 temperature 20 4320 < th dose independent no NA NA
801 273.31 temperature 15 4320 > th dose dependent rect. 3 3
805 273.31 temperature 15 4320 > th dose dependent rect. 21 9
809 273.32 temperature 25 4320 < th dose dependent sin 12 NA
813 273.33 temperature 20 4320 > th dose independent no NA NA
839 273.35 temperature 20 4320 > th dose independent rect. 3 23
850 273.37 temperature 20 4320 < th dose independent rect. 3 23
883 273.41 radiation 1 4320 < th dose dependent rect. 17 1
944 273.51 temperature 30 14400 < th dose independent rect. 18 5
948 273.51 atmosphere 1005 30 > th dose dependent rect. 24 9