Os10g0358700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os10g0358700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.5 | 0.359 | 6.58 | 1.28 | 0.654 | -0.805 | 0.395 | 2.85 | 0.316 | 17.1 | 10.86 | 1304 | -- | -- |
| 65.3 | 0.376 | 6.64 | 0.832 | 0.674 | -0.784 | 0.201 | -- | 0.241 | 17 | 4.897 | 8439 | -- | -- |
| 58.89 | 0.357 | 6.58 | 1.28 | 0.655 | -0.807 | -- | 2.82 | 0.319 | 17.1 | 11.45 | 1316 | -- | -- |
| 65.37 | 0.377 | 6.64 | 0.831 | 0.675 | -0.776 | -- | -- | 0.243 | 17 | 4.476 | 8452 | -- | -- |
| 81.02 | 0.419 | 6.57 | 1.29 | -- | -0.891 | -- | 2.7 | 0.332 | -- | 16.01 | 1263 | -- | -- |
| 75.18 | 0.406 | 6.69 | 0.419 | 0.7 | -- | 0.189 | -- | 0.0136 | 16.9 | -- | -- | -- | -- |
| 75.27 | 0.406 | 6.69 | 0.42 | 0.701 | -- | -- | -- | 0.0145 | 16.9 | -- | -- | -- | -- |
| 89.18 | 0.44 | 6.65 | 0.699 | -- | -0.764 | -- | -- | 0.155 | -- | 14 | 2687 | -- | -- |
| 74.99 | 0.403 | 6.69 | -- | 0.691 | -0.319 | -- | -- | 0.0788 | 17.2 | 28.3 | 8225 | -- | -- |
| 101.24 | 0.47 | 6.68 | 0.394 | -- | -- | -- | -- | -0.00362 | -- | -- | -- | -- | -- |
| 79.91 | 0.418 | 6.7 | -- | 0.694 | -- | -- | -- | -0.0322 | 16.9 | -- | -- | -- | -- |
| 98.15 | 0.461 | 6.67 | -- | -- | -0.387 | -- | -- | 0.0636 | -- | 28.65 | 8366 | -- | -- |
| 105.33 | 0.479 | 6.69 | -- | -- | -- | -- | -- | -0.0473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.40 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 56.41 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 3 | 56.47 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 4 | 56.47 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 5 | 56.50 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 9 | 56.55 | wind | 7 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 20 | 56.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 28 | 56.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 32 | 56.86 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 58 | 57.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 64 | 57.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 78 | 57.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 80 | 57.18 | wind | 1 | 43200 | > th | dose dependent | sin | 23 | NA |
| 98 | 57.21 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 112 | 57.26 | wind | 9 | 43200 | < th | dose dependent | sin | 23 | NA |
| 122 | 57.29 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 183 | 57.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 184 | 57.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 187 | 57.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 204 | 57.42 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 240 | 57.47 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 241 | 57.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 267 | 57.49 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 284 | 57.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 319 | 57.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 375 | 57.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 19 |
| 386 | 57.59 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 390 | 57.59 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 408 | 57.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 411 | 57.62 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 471 | 57.65 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 20 |
| 569 | 57.70 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 22 |
| 595 | 57.72 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 19 |
| 601 | 57.73 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 638 | 57.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 644 | 57.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 648 | 57.75 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 665 | 57.76 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 704 | 57.78 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 720 | 57.79 | wind | 1 | 43200 | > th | dose dependent | no | NA | NA |
| 751 | 57.81 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 793 | 57.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 813 | 57.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 854 | 57.86 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 868 | 57.87 | wind | 9 | 43200 | < th | dose dependent | no | NA | NA |
| 900 | 57.89 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 949 | 57.92 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 950 | 57.92 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 955 | 57.92 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 978 | 57.93 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 15 |