Os10g0358100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0358100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 387.81 | 0.917 | 5.48 | 4.41 | 0.349 | -268 | -1.21 | -557 | -0.32 | 17.7 | 15 | 90 | -- | -- |
| 388.09 | 0.925 | 3.18 | -0.384 | 0.347 | -4.45 | -1.21 | -- | -0.316 | 17.8 | 15 | 90 | -- | -- |
| 391.43 | 0.921 | 5.49 | 4.43 | 0.341 | -268 | -- | -557 | -0.325 | 17.5 | 15.02 | 91 | -- | -- |
| 391.67 | 0.928 | 3.18 | -0.376 | 0.341 | -4.44 | -- | -- | -0.321 | 17.6 | 15 | 90 | -- | -- |
| 397.5 | 0.929 | 5.48 | 4.42 | -- | -268 | -- | -557 | -0.333 | -- | 15.02 | 91 | -- | -- |
| 425.33 | 0.967 | 3.19 | -0.573 | 0.339 | -- | -1.33 | -- | -0.363 | 19 | -- | -- | -- | -- |
| 429.8 | 0.971 | 3.19 | -0.547 | 0.341 | -- | -- | -- | -0.365 | 18.4 | -- | -- | -- | -- |
| 397.7 | 0.933 | 3.18 | -0.388 | -- | -4.42 | -- | -- | -0.329 | -- | 15 | 90 | -- | -- |
| 395.33 | 0.931 | 3.17 | -- | 0.347 | -4.63 | -- | -- | -0.278 | 17.5 | 14.6 | 293 | -- | -- |
| 435.85 | 0.976 | 3.19 | -0.555 | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
| 437.67 | 0.979 | 3.18 | -- | 0.348 | -- | -- | -- | -0.304 | 18.4 | -- | -- | -- | -- |
| 393.81 | 0.924 | 3.16 | -- | -- | -4.49 | -- | -- | -0.254 | -- | 14.6 | 1755 | -- | -- |
| 443.98 | 0.984 | 3.17 | -- | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 374.24 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 4 | 378.25 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 7 | 379.43 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 8 | 380.08 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 10 | 380.48 | temperature | 15.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 16 | 381.12 | temperature | 15.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 19 | 381.90 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 20 | 381.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 12 |
| 28 | 382.85 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 29 | 382.91 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 41 | 383.41 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 43 | 383.45 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 5 |
| 44 | 383.49 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 45 | 383.52 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 47 | 383.58 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 3 | 8 |
| 48 | 383.59 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 52 | 383.60 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 56 | 383.65 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 66 | 383.82 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 77 | 383.89 | temperature | 15.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 82 | 383.92 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 95 | 384.08 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 19 |
| 105 | 384.18 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 117 | 384.38 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 144 | 384.73 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 148 | 384.85 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 159 | 385.06 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 164 | 385.11 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 166 | 385.14 | temperature | 15.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 167 | 385.14 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 170 | 385.20 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 190 | 385.33 | temperature | 20.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 193 | 385.35 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 198 | 385.35 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 200 | 385.36 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 205 | 385.39 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 214 | 385.40 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 222 | 385.42 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 224 | 385.43 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 243 | 385.51 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 245 | 385.51 | radiation | 1.0 | 720 | < th | dose independent | rect. | 12 | 2 |
| 259 | 385.51 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 308 | 385.87 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 14 | 3 |
| 321 | 385.97 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 14 | 2 |
| 343 | 386.16 | temperature | 15.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 344 | 386.16 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 345 | 386.17 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 10 | 7 |
| 361 | 386.32 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 5 |
| 429 | 386.81 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 431 | 386.81 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 497 | 387.13 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 507 | 387.18 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 23 |
| 528 | 387.33 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 559 | 387.59 | humidity | 90.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 576 | 387.74 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 3 | NA |
| 580 | 387.78 | temperature | 15.0 | 90 | > th | dose independent | sin | 19 | NA |
| 583 | 387.81 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 585 | 387.81 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 633 | 387.81 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 635 | 387.81 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 637 | 387.81 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 640 | 387.81 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 771 | 387.81 | temperature | 15.0 | 270 | < th | dose independent | rect. | 24 | 10 |