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Os10g0357800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : N2,N2-dimethylguanosine tRNA methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.34 (0.0297) R2 : 0.675
β1 : -1.3 (0.109) R2dD : 0.106 R2D : 0.0833
β2 : 3.11 (0.116) R2dC : 1.24 R2C : -0.382
β3 : 2.27 (0.0969) R2dE : 0.936 R2E : -0.71
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.361 (0.0637) R2dN8 : 0.0311 R2N8 : 0.0254
σ : 0.555
deviance : 142.01
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_____
C
peak time of C : 15.6
E
wheather : radiation
threshold : 0.02169
memory length : 102
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.87
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.59 0.557 7.33 -1.28 3.11 2.28 -0.976 -0.314 -0.355 15.6 0.06 103 5.02 --
140.69 0.552 7.33 -1.29 3.11 2.26 -0.684 -- -0.354 15.6 0.05993 102 4.88 --
141.54 0.554 7.34 -1.31 3.13 2.29 -- 0.324 -0.366 15.6 0.02409 103 4.9 --
142.01 0.555 7.34 -1.3 3.11 2.27 -- -- -0.361 15.6 0.02169 102 4.87 --
201.9 0.662 7.36 -1.56 -- 1.96 -- -0.195 -0.532 -- 89.59 490 15.5 --
193.29 0.652 7.39 -1.37 1.85 -- -0.475 -- -0.496 18.9 -- -- -- --
193.86 0.652 7.39 -1.37 1.85 -- -- -- -0.497 19 -- -- -- --
188.74 0.64 7.33 -1.33 -- 2.21 -- -- -0.42 -- 135.7 520 15.7 --
186.7 0.636 7.32 -- 3.14 2.27 -- -- -0.228 15.6 0.02993 112 5.18 --
373.47 0.903 7.35 -1.4 -- -- -- -- -0.531 -- -- -- -- --
243.09 0.729 7.36 -- 1.86 -- -- -- -0.345 18.9 -- -- -- --
234.07 0.713 7.29 -- -- 2.32 -- -- -0.261 -- 122.2 523 15.8 --
425.53 0.963 7.32 -- -- -- -- -- -0.376 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.48 temperature 10.0 10 > th dose dependent rect. 5 17
3 129.21 temperature 20.0 270 > th dose independent rect. 2 6
4 129.48 temperature 10.0 270 > th dose dependent rect. 2 6
10 131.72 temperature 20.0 270 > th dose independent rect. 3 17
11 131.77 temperature 20.0 270 > th dose independent rect. 3 4
16 132.12 temperature 10.0 270 > th dose dependent rect. 2 19
32 135.22 temperature 15.0 270 > th dose dependent rect. 3 4
36 135.46 temperature 20.0 90 > th dose independent rect. 5 16
54 137.75 radiation 40.0 270 < th dose independent rect. 15 16
56 137.76 temperature 10.0 270 > th dose independent rect. 7 8
57 137.76 atmosphere 1015.0 270 < th dose independent rect. 7 8
58 137.76 temperature 10.0 270 > th dose independent rect. 15 16
62 137.97 atmosphere 995.0 270 > th dose independent rect. 7 8
70 138.72 precipitation 0.1 270 < th dose independent rect. 7 8
71 138.72 precipitation 0.1 270 < th dose dependent rect. 7 8
72 138.83 atmosphere 995.0 270 > th dose independent rect. 15 16
73 138.84 wind 1.0 270 > th dose independent rect. 7 8
74 138.84 wind 9.0 270 < th dose independent rect. 7 8
75 138.90 precipitation 0.1 270 < th dose independent rect. 15 16
76 138.90 precipitation 0.1 270 < th dose dependent rect. 15 16
77 138.92 temperature 15.0 270 > th dose dependent rect. 4 2
80 139.25 temperature 10.0 270 > th dose dependent rect. 14 18
82 139.33 wind 7.0 270 < th dose independent rect. 19 8
87 139.54 wind 9.0 270 < th dose independent rect. 15 16
88 139.63 temperature 10.0 270 > th dose dependent rect. 15 16
90 139.87 humidity 60.0 270 > th dose dependent rect. 3 4
93 139.99 precipitation 0.1 270 < th dose independent rect. 3 16
94 139.99 precipitation 0.1 270 < th dose dependent rect. 3 16
106 140.22 humidity 50.0 270 > th dose dependent rect. 2 6
111 140.59 humidity 80.0 270 > th dose independent rect. 3 4
116 140.80 humidity 70.0 270 > th dose independent rect. 2 6
118 140.92 temperature 10.0 270 > th dose independent rect. 19 8
119 140.92 temperature 30.0 270 < th dose independent rect. 19 8
120 140.92 humidity 50.0 270 > th dose independent rect. 19 8
121 140.92 atmosphere 995.0 270 > th dose independent rect. 19 8
122 140.92 radiation 1.0 270 < th dose independent rect. 19 8
128 140.92 atmosphere 1015.0 270 < th dose independent rect. 3 16
129 140.92 radiation 1.0 270 < th dose dependent rect. 19 8
145 141.17 radiation 30.0 270 < th dose independent rect. 2 6
148 141.21 precipitation 0.1 270 < th dose independent rect. 19 8
149 141.21 precipitation 0.1 270 < th dose dependent rect. 19 8
152 141.27 wind 9.0 270 < th dose independent rect. 2 6
153 141.27 temperature 10.0 270 > th dose independent rect. 2 6
155 141.27 temperature 30.0 270 < th dose independent rect. 2 6
156 141.27 humidity 50.0 270 > th dose independent rect. 2 6
158 141.27 atmosphere 995.0 270 > th dose independent rect. 2 6
159 141.27 atmosphere 1015.0 270 < th dose independent rect. 2 6
160 141.27 temperature 10.0 270 > th dose independent rect. 8 18
167 141.38 precipitation 0.1 270 < th dose independent rect. 2 6
168 141.38 precipitation 0.1 270 < th dose dependent rect. 2 6
170 141.50 humidity 50.0 270 > th dose independent rect. 7 8
176 141.65 wind 9.0 270 < th dose independent rect. 8 18
189 141.94 humidity 50.0 270 > th dose independent rect. 8 18
210 142.03 radiation 20.0 270 < th dose independent rect. 3 4
213 142.16 wind 1.0 270 > th dose independent rect. 8 18
214 142.16 radiation 40.0 270 < th dose dependent rect. 2 6
215 142.17 humidity 50.0 270 > th dose independent rect. 7 20
216 142.19 wind 9.0 270 < th dose dependent rect. 2 6
217 142.26 wind 9.0 270 < th dose independent rect. 3 16
220 142.30 wind 9.0 270 < th dose dependent rect. 3 4
223 142.39 wind 1.0 270 > th dose independent rect. 21 16
254 142.56 precipitation 0.1 270 < th dose independent rect. 8 18
255 142.56 precipitation 0.1 270 < th dose dependent rect. 8 18
283 142.92 radiation 40.0 270 < th dose dependent rect. 3 4
291 143.14 radiation 1.0 90 < th dose dependent sin 11 NA
296 143.18 temperature 15.0 270 > th dose independent rect. 13 8
308 143.29 temperature 20.0 270 > th dose independent rect. 14 18
312 143.39 precipitation 0.1 90 < th dose independent rect. 5 16
314 143.39 precipitation 0.1 90 < th dose dependent rect. 5 16
362 143.68 atmosphere 1015.0 90 < th dose independent rect. 5 16
366 143.73 atmosphere 995.0 270 > th dose independent rect. 3 16
369 143.75 temperature 10.0 270 > th dose independent rect. 21 16
370 143.75 atmosphere 995.0 270 > th dose independent rect. 21 16
387 144.08 precipitation 0.1 270 < th dose independent rect. 13 8
389 144.08 precipitation 0.1 270 < th dose dependent rect. 13 8
420 144.30 radiation 1.0 90 < th dose dependent rect. 21 15
426 144.39 wind 1.0 90 > th dose independent rect. 21 8
434 144.46 wind 9.0 90 < th dose independent rect. 5 16
444 144.61 precipitation 0.1 270 < th dose independent rect. 21 16
445 144.61 precipitation 0.1 270 < th dose dependent rect. 21 16
451 144.66 radiation 1.0 270 < th dose dependent rect. 6 21
456 144.80 atmosphere 1015.0 270 < th dose dependent rect. 3 4
459 144.86 wind 9.0 270 < th dose independent rect. 21 16
464 144.90 atmosphere 1015.0 270 < th dose independent rect. 13 8
466 144.91 wind 1.0 270 > th dose independent rect. 13 8
473 145.01 wind 1.0 270 > th dose independent rect. 9 16
494 145.30 temperature 15.0 10 > th dose dependent rect. 5 4
497 145.33 humidity 50.0 270 > th dose independent rect. 21 16
516 145.61 wind 9.0 270 < th dose independent rect. 13 8
523 145.67 precipitation 0.1 10 < th dose independent rect. 5 17
525 145.67 precipitation 0.1 10 < th dose dependent rect. 5 17
556 145.85 atmosphere 995.0 270 > th dose independent rect. 8 18
560 145.90 wind 1.0 90 > th dose independent rect. 9 20
577 146.00 radiation 40.0 270 < th dose dependent rect. 15 16
592 146.12 atmosphere 995.0 270 > th dose independent rect. 13 8
600 146.18 radiation 1.0 10 < th dose dependent rect. 22 7
602 146.19 wind 9.0 270 < th dose dependent rect. 20 6
617 146.21 temperature 10.0 10 > th dose independent rect. 22 7
618 146.21 temperature 30.0 10 < th dose independent rect. 22 7
619 146.21 humidity 50.0 10 > th dose independent rect. 22 7
622 146.21 atmosphere 995.0 10 > th dose independent rect. 22 7
623 146.21 radiation 1.0 10 < th dose independent rect. 22 7
628 146.21 temperature 10.0 10 > th dose independent rect. 5 17
630 146.21 atmosphere 1015.0 10 < th dose independent rect. 5 17
643 146.26 radiation 10.0 270 < th dose independent rect. 4 2
665 146.48 wind 9.0 10 < th dose independent rect. 5 17
689 146.55 radiation 1.0 10 < th dose dependent rect. 22 14
848 147.36 temperature 10.0 270 > th dose dependent rect. 13 8
854 147.40 temperature 10.0 10 > th dose dependent rect. 16 17
876 147.45 radiation 1.0 270 > th dose independent rect. 7 8
883 147.48 radiation 1.0 270 > th dose independent rect. 17 13
885 147.52 radiation 1.0 270 > th dose independent rect. 16 15
899 147.57 temperature 30.0 270 < th dose independent rect. 21 16
918 147.71 radiation 1.0 90 < th dose independent sin 11 NA
925 147.77 temperature 30.0 270 < th dose independent rect. 8 18
938 147.86 temperature 30.0 270 < th dose independent rect. 7 8