Os10g0355800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0355800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.93 | 0.542 | 12.1 | -0.139 | 0.683 | -1.77 | 0.545 | 1.82 | -0.9 | 1.76 | 19.75 | 90 | -- | -- |
| 133.36 | 0.542 | 12.2 | -0.435 | 0.675 | -2.11 | 0.0927 | -- | -0.98 | 2.59 | 15.11 | 72 | -- | -- |
| 133.75 | 0.539 | 12.1 | -0.232 | 0.681 | -1.75 | -- | 1.31 | -0.919 | 1.82 | 19.66 | 89 | -- | -- |
| 133.38 | 0.541 | 12.2 | -0.437 | 0.674 | -2.1 | -- | -- | -0.98 | 2.59 | 15.26 | 82 | -- | -- |
| 150.15 | 0.574 | 12.1 | -0.178 | -- | -2.4 | -- | 0.974 | -0.826 | -- | 19.7 | 60 | -- | -- |
| 178.21 | 0.626 | 12.2 | -0.843 | 1.29 | -- | 0.411 | -- | -1.28 | 2.45 | -- | -- | -- | -- |
| 178.82 | 0.626 | 12.2 | -0.854 | 1.29 | -- | -- | -- | -1.28 | 2.45 | -- | -- | -- | -- |
| 150.43 | 0.571 | 12.1 | -0.282 | -- | -2.57 | -- | -- | -0.853 | -- | 17.5 | 11 | -- | -- |
| 137.94 | 0.55 | 12.1 | -- | 0.607 | -2.33 | -- | -- | -0.906 | 2.62 | 15 | 54 | -- | -- |
| 277.43 | 0.778 | 12.2 | -0.799 | -- | -- | -- | -- | -1.25 | -- | -- | -- | -- | -- |
| 198.03 | 0.658 | 12.2 | -- | 1.28 | -- | -- | -- | -1.19 | 2.44 | -- | -- | -- | -- |
| 152.35 | 0.575 | 12.1 | -- | -- | -2.72 | -- | -- | -0.814 | -- | 16.97 | 11 | -- | -- |
| 294.27 | 0.801 | 12.2 | -- | -- | -- | -- | -- | -1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 127.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 21 | 131.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 36 | 132.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 41 | 132.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 43 | 132.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 52 | 132.96 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 57 | 133.10 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 68 | 133.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 78 | 133.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 79 | 133.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 80 | 133.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 127 | 133.99 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 138 | 134.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 140 | 134.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 165 | 134.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 238 | 134.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 262 | 134.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 265 | 134.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 345 | 134.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 352 | 134.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 358 | 134.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 359 | 134.78 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 420 | 134.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 462 | 135.08 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 498 | 135.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 515 | 135.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 518 | 135.27 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 538 | 135.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 540 | 135.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 547 | 135.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 621 | 135.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |