Os10g0350500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleoside phosphatase GDA1/CD39 family protein.
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Os10g0350500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleoside phosphatase GDA1/CD39 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.34 | 0.327 | 9.98 | 1.72 | 0.238 | -0.642 | 0.254 | 9.23 | 0.0999 | 10.3 | 28.11 | 3281 | -- | -- |
| 54.85 | 0.345 | 10.2 | 0.000303 | 0.252 | 0.415 | 0.229 | -- | -0.286 | 8.34 | 32.49 | 13240 | -- | -- |
| 48.57 | 0.325 | 9.98 | 1.7 | 0.241 | -0.636 | -- | 9.16 | 0.0959 | 9.93 | 28.12 | 3305 | -- | -- |
| 54.31 | 0.343 | 10.2 | -0.0061 | 0.257 | 0.434 | -- | -- | -0.296 | 9.58 | 32.53 | 13240 | -- | -- |
| 51.96 | 0.336 | 9.98 | 1.79 | -- | -0.693 | -- | 9.43 | 0.11 | -- | 28.07 | 3243 | -- | -- |
| 60.73 | 0.365 | 10.2 | 0.104 | 0.25 | -- | 0.101 | -- | -0.138 | 9.47 | -- | -- | -- | -- |
| 60.76 | 0.365 | 10.2 | 0.107 | 0.251 | -- | -- | -- | -0.138 | 9.35 | -- | -- | -- | -- |
| 57.99 | 0.355 | 10.2 | -0.0519 | -- | 0.418 | -- | -- | -0.31 | -- | 32.38 | 13210 | -- | -- |
| 54.28 | 0.343 | 10.2 | -- | 0.253 | 0.421 | -- | -- | -0.312 | 9.54 | 32.52 | 13240 | -- | -- |
| 64.44 | 0.375 | 10.2 | 0.106 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 61.07 | 0.366 | 10.2 | -- | 0.251 | -- | -- | -- | -0.15 | 9.32 | -- | -- | -- | -- |
| 58.02 | 0.355 | 10.2 | -- | -- | 0.423 | -- | -- | -0.32 | -- | 32.2 | 13220 | -- | -- |
| 64.74 | 0.376 | 10.2 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 2 | 47.08 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 4 | 47.23 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 12 | 47.62 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 13 | 47.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 16 | 47.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 18 | 47.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 19 | 47.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 6 |
| 20 | 47.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 21 | 47.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 24 | 48.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 18 |
| 25 | 48.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 28 | 48.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 30 | 48.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 31 | 48.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 40 | 48.38 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 41 | 48.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 46 | 48.46 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 49 | 48.51 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 61 | 48.57 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 63 | 48.58 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 66 | 48.58 | radiation | 10.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 67 | 48.59 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 74 | 48.60 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 75 | 48.60 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 85 | 48.65 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 89 | 48.69 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 91 | 48.70 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 94 | 48.74 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 100 | 48.76 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 113 | 48.79 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 115 | 48.79 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 123 | 48.79 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 135 | 48.81 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 139 | 48.81 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 143 | 48.82 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 148 | 48.84 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 149 | 48.84 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 159 | 48.89 | temperature | 30.0 | 4320 | < th | dose independent | sin | 22 | NA |
| 162 | 48.89 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 171 | 48.90 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 177 | 48.91 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 198 | 48.93 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 213 | 48.93 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 20 |
| 222 | 48.94 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 225 | 48.94 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 11 |
| 250 | 48.94 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 288 | 48.95 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 17 |
| 323 | 48.96 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 325 | 48.96 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 19 |
| 377 | 48.99 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 384 | 48.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 385 | 49.00 | temperature | 30.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 436 | 49.02 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 439 | 49.02 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 503 | 49.11 | temperature | 30.0 | 4320 | > th | dose independent | sin | 21 | NA |
| 521 | 49.11 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 603 | 49.17 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 732 | 49.21 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 769 | 49.23 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 770 | 49.23 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 774 | 49.24 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 779 | 49.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 817 | 49.27 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 912 | 49.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 962 | 49.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 988 | 49.38 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 995 | 49.39 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 16 |