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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0347800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Actin-binding FH2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0466) R2 : 0.127
β1 : 0.802 (0.171) R2dD : 0.0439 R2D : 0.0388
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.31 (0.829) R2dE : 0.0789 R2E : 0.0795
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.209 (0.0996) R2dN8 : 0.0113 R2N8 : -4e-04
σ : 0.872
deviance : 350.66
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.1
memory length : 31
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.15
open length of G : 1.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.67 0.87 3.24 1.41 0.192 -27.2 0.0599 189 0.204 4.35 1000 10 7 1
349.36 0.877 3.34 0.794 0.19 4.87 0.0658 -- 0.205 4.28 1000 10 7 1
348.67 0.876 3.23 1.47 0.193 -29.6 -- 202 0.203 4.52 1000 11 7 1.09
348.67 0.87 3.34 0.796 0.193 5.26 -- -- 0.203 4.51 999.1 29 6.92 0.953
350.66 0.877 3.23 1.45 -- -28.5 -- 196 0.209 -- 1000 11 7 1.09
379.26 0.913 3.34 0.834 0.239 -- 0.0844 -- 0.187 5.14 -- -- -- --
379.28 0.912 3.34 0.834 0.24 -- -- -- 0.187 5.26 -- -- -- --
350.66 0.872 3.34 0.802 -- 5.31 -- -- 0.209 -- 999.1 31 7.15 1.27
365.33 0.89 3.36 -- 0.207 5.39 -- -- 0.116 4.4 999.1 65 6.28 1.41
382.27 0.914 3.35 0.842 -- -- -- -- 0.193 -- -- -- -- --
397.6 0.933 3.37 -- 0.254 -- -- -- 0.0942 5.13 -- -- -- --
367.62 0.893 3.36 -- -- 5.43 -- -- 0.121 -- 999.2 67 6.54 1.47
400.98 0.935 3.37 -- -- -- -- -- 0.0996 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.67 atmosphere 1000 10 < th dose independent rect. 7 1
8 348.67 atmosphere 1000 10 < th dose dependent rect. 7 1
23 349.44 wind 1 30 < th dose independent rect. 5 2
28 350.15 wind 1 30 < th dose dependent rect. 5 2
66 356.49 wind 1 30 < th dose dependent rect. 5 13
70 356.50 wind 1 30 < th dose dependent rect. 5 11
73 356.71 wind 1 30 < th dose dependent rect. 5 7
83 357.35 wind 1 30 < th dose independent rect. 5 13
87 357.35 wind 1 30 < th dose dependent rect. 5 19
93 357.70 wind 1 30 < th dose independent rect. 5 19
140 361.68 atmosphere 1005 270 < th dose dependent rect. 4 4
145 361.85 radiation 30 90 > th dose independent rect. 7 1
176 363.39 temperature 25 270 > th dose dependent rect. 4 3
199 364.83 temperature 25 270 > th dose independent rect. 4 4
233 365.68 radiation 30 90 > th dose dependent rect. 7 1
251 365.75 temperature 25 90 > th dose independent rect. 7 1
262 366.13 temperature 15 10 > th dose dependent rect. 8 15
283 366.69 temperature 15 10 > th dose dependent rect. 8 20
284 366.71 temperature 30 270 < th dose independent rect. 3 14
293 366.89 temperature 25 10 > th dose dependent rect. 7 2
296 366.98 temperature 25 10 < th dose dependent sin 21 NA
330 367.30 humidity 90 1440 > th dose independent rect. 2 8
338 367.40 temperature 30 90 < th dose dependent rect. 13 6
342 367.46 humidity 90 1440 > th dose dependent rect. 2 8
343 367.47 temperature 15 10 > th dose dependent rect. 10 13
345 367.50 humidity 80 10 > th dose independent rect. 10 1
362 367.65 humidity 90 1440 < th dose independent rect. 2 8
363 367.66 atmosphere 1005 10 < th dose independent rect. 5 5
369 367.67 temperature 15 10 > th dose dependent rect. 10 18
390 367.84 humidity 90 1440 > th dose dependent rect. 2 19
412 368.00 humidity 90 1440 < th dose independent rect. 24 10
420 368.05 humidity 90 1440 > th dose dependent sin 3 NA
431 368.10 humidity 80 10 > th dose dependent rect. 10 1
459 368.20 humidity 90 1440 > th dose dependent rect. 18 16
466 368.23 humidity 90 1440 > th dose independent sin 6 NA
473 368.24 temperature 25 10 < th dose dependent rect. 9 11
484 368.29 temperature 30 10 < th dose dependent rect. 13 7
507 368.38 atmosphere 1005 90 < th dose independent rect. 5 5
536 368.49 radiation 20 10 < th dose independent rect. 12 13
537 368.49 wind 1 270 < th dose dependent rect. 3 3
555 368.53 temperature 30 270 < th dose independent rect. 15 1
561 368.55 humidity 80 1440 < th dose independent rect. 9 1
567 368.57 humidity 80 1440 > th dose independent rect. 9 1
585 368.59 humidity 90 1440 > th dose dependent rect. 23 11
650 368.72 atmosphere 1000 270 < th dose independent rect. 4 1
668 368.76 temperature 30 30 < th dose independent rect. 15 10
673 368.78 humidity 90 1440 > th dose independent rect. 19 15
717 368.86 humidity 90 1440 > th dose dependent rect. 7 2
733 368.90 atmosphere 1005 270 > th dose dependent rect. 15 1
760 368.95 temperature 10 30 > th dose dependent rect. 1 14
798 369.02 humidity 90 1440 > th dose dependent no NA NA
818 369.06 humidity 90 1440 > th dose dependent rect. 7 23
826 369.09 humidity 90 1440 < th dose independent sin 6 NA
831 369.10 wind 1 30 < th dose dependent sin 0 NA
865 369.16 temperature 25 90 < th dose independent rect. 12 7
894 369.26 humidity 50 90 > th dose independent rect. 15 10
927 369.33 temperature 30 10 > th dose independent rect. 10 1
929 369.33 wind 1 270 < th dose independent rect. 3 3
960 369.40 humidity 90 1440 > th dose independent rect. 2 1
985 369.47 wind 1 10 > th dose independent rect. 15 10
987 369.47 temperature 30 90 < th dose dependent rect. 15 4
997 369.48 radiation 40 10 < th dose dependent rect. 13 12