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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0347000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : X8 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0222) R2 : 0.00674
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0824 (0.0468) R2dN8 : 0.0087 R2N8 : 0.00674
σ : 0.419
deviance : 80.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.82 0.406 -2210 13600 0.0863 -649000 -0.214 3960000 0.0788 2.34 995 10 -- --
74.58 0.405 2.93 -0.08 0.086 2.33 -0.209 -- 0.0778 2.21 994.8 10 -- --
75.97 0.406 -2210 13600 0.0864 -649000 -- 3960000 0.0804 1.48 995 10 -- --
74.72 0.405 2.93 -0.0738 0.0867 2.34 -- -- 0.0793 1.21 994.8 10 -- --
76.42 0.407 -2210 13600 -- -649000 -- 3960000 0.082 -- 995 10 -- --
79.95 0.419 2.94 -0.0679 0.0657 -- -0.28 -- 0.0726 2.65 -- -- -- --
80.13 0.419 2.94 -0.0606 0.0741 -- -- -- 0.0747 0.339 -- -- -- --
75.18 0.406 2.93 -0.0703 -- 2.31 -- -- 0.0811 -- 994.9 2 -- --
74.86 0.405 2.93 -- 0.0854 2.33 -- -- 0.0875 1.18 994.8 10 -- --
80.48 0.419 2.93 -0.0582 -- -- -- -- 0.0759 -- -- -- -- --
80.23 0.419 2.93 -- 0.0732 -- -- -- 0.0815 0.295 -- -- -- --
75.31 0.406 2.93 -- -- 2.3 -- -- 0.0889 -- 994.9 2 -- --
80.57 0.419 2.93 -- -- -- -- -- 0.0824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.56 atmosphere 995.0 30 > th dose independent rect. 3 23
3 71.24 atmosphere 1005.0 30 > th dose dependent rect. 1 2
5 71.65 humidity 80.0 30 > th dose independent rect. 2 1
6 71.70 humidity 80.0 30 > th dose dependent rect. 2 1
7 71.71 wind 3.0 30 < th dose dependent rect. 2 1
12 71.74 wind 3.0 30 < th dose independent rect. 2 1
13 71.74 atmosphere 1005.0 30 > th dose independent rect. 2 1
19 71.76 temperature 10.0 30 > th dose independent rect. 2 1
21 71.76 temperature 25.0 30 < th dose independent rect. 2 1
23 71.76 humidity 50.0 30 > th dose independent rect. 2 1
26 71.76 atmosphere 995.0 30 > th dose independent rect. 2 1
27 71.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 71.76 radiation 1.0 30 < th dose independent rect. 2 1
34 71.76 precipitation 0.1 30 < th dose independent rect. 2 1
35 71.76 temperature 10.0 30 > th dose independent rect. 3 23
36 71.76 temperature 10.0 30 > th dose dependent rect. 2 1
37 71.76 temperature 30.0 30 < th dose dependent rect. 2 1
38 71.76 atmosphere 995.0 30 > th dose dependent rect. 2 1
40 71.76 radiation 1.0 30 < th dose dependent rect. 2 1
45 71.76 precipitation 0.1 30 < th dose dependent rect. 2 1
53 71.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
58 71.88 wind 1.0 30 > th dose independent rect. 2 1
106 72.08 wind 9.0 30 < th dose independent rect. 3 23
114 72.83 precipitation 0.1 10 < th dose independent rect. 3 23
115 72.83 precipitation 0.1 10 < th dose dependent rect. 3 23
120 73.27 wind 1.0 10 < th dose independent rect. 13 14
130 73.55 humidity 90.0 90 < th dose independent rect. 1 2
142 73.84 wind 1.0 10 < th dose independent rect. 6 21
156 74.26 atmosphere 995.0 720 > th dose independent rect. 23 16
157 74.28 atmosphere 995.0 1440 > th dose independent rect. 4 12
158 74.31 atmosphere 1000.0 90 < th dose dependent rect. 14 1
159 74.32 radiation 40.0 720 > th dose dependent rect. 15 1
176 74.33 atmosphere 1000.0 10 < th dose dependent rect. 16 1
186 74.38 atmosphere 995.0 90 > th dose independent sin 7 NA
192 74.44 humidity 50.0 30 > th dose independent rect. 3 23
193 74.48 atmosphere 995.0 10 > th dose independent sin 6 NA
200 74.60 humidity 80.0 30 < th dose independent rect. 1 5
203 74.60 humidity 80.0 30 < th dose dependent rect. 1 5
209 74.64 wind 1.0 720 < th dose dependent rect. 15 1
210 74.64 radiation 1.0 14400 < th dose dependent rect. 3 1
211 74.65 wind 9.0 1440 < th dose independent rect. 3 1
212 74.65 temperature 10.0 1440 > th dose independent rect. 3 1
215 74.65 temperature 30.0 1440 < th dose independent rect. 3 1
219 74.65 humidity 50.0 1440 > th dose independent rect. 3 1
228 74.65 atmosphere 995.0 1440 > th dose independent rect. 3 1
229 74.65 radiation 1.0 1440 < th dose independent rect. 3 1
249 74.65 atmosphere 995.0 90 < th dose independent rect. 18 21
250 74.65 temperature 10.0 1440 > th dose independent rect. 4 23
253 74.65 radiation 1.0 1440 < th dose dependent rect. 3 1
274 74.68 atmosphere 995.0 90 < th dose dependent rect. 18 21
275 74.70 radiation 1.0 720 > th dose dependent rect. 15 1
276 74.70 atmosphere 1000.0 10 < th dose dependent rect. 15 8
286 74.78 atmosphere 995.0 10 < th dose independent sin 6 NA
287 74.78 atmosphere 995.0 90 < th dose independent rect. 14 1
288 74.78 atmosphere 995.0 10 < th dose independent rect. 15 1
329 74.78 atmosphere 995.0 720 > th dose independent rect. 7 8
415 74.78 atmosphere 995.0 10 < th dose dependent sin 6 NA
572 74.86 humidity 80.0 30 < th dose dependent rect. 1 3
590 74.88 humidity 80.0 30 < th dose dependent rect. 1 1
597 74.89 wind 1.0 30 < th dose dependent rect. 11 16
599 74.90 wind 1.0 30 < th dose dependent rect. 13 14
627 75.06 temperature 30.0 30 > th dose dependent rect. 16 1
631 75.07 wind 1.0 30 < th dose dependent rect. 8 19
635 75.11 radiation 20.0 720 > th dose independent rect. 15 1
651 75.23 wind 1.0 720 < th dose independent rect. 15 1
652 75.23 radiation 40.0 720 > th dose independent rect. 15 1
671 75.24 wind 1.0 90 < th dose dependent rect. 13 3
673 75.25 temperature 30.0 10 > th dose dependent rect. 15 3
696 75.27 atmosphere 1015.0 30 < th dose independent rect. 3 23
754 75.38 humidity 60.0 10 < th dose independent rect. 15 1
759 75.41 wind 1.0 10 > th dose independent sin 18 NA
760 75.41 wind 1.0 90 < th dose independent rect. 13 3
764 75.42 atmosphere 995.0 10 < th dose dependent sin 0 NA
843 75.48 wind 1.0 10 < th dose independent sin 18 NA
847 75.49 atmosphere 995.0 720 > th dose independent rect. 3 16
873 75.54 humidity 50.0 30 > th dose dependent rect. 3 23
889 75.61 radiation 20.0 720 > th dose independent rect. 15 16
918 75.67 radiation 20.0 720 > th dose dependent rect. 15 16
953 75.73 radiation 10.0 30 < th dose independent rect. 3 23
956 75.74 wind 9.0 720 < th dose dependent rect. 15 1
988 75.83 humidity 90.0 720 < th dose dependent rect. 15 1
998 75.87 temperature 30.0 10 > th dose dependent sin 12 NA