Os10g0345900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os10g0345900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.8 | 0.561 | 2.92 | -1.04 | 0.168 | -1.69 | -0.508 | 8.99 | -0.194 | 16.8 | 1000 | 694 | -- | -- |
| 154.99 | 0.58 | 2.83 | -0.552 | 0.154 | -0.591 | -0.422 | -- | -0.226 | 17.5 | 997.1 | 1406 | -- | -- |
| 143.27 | 0.557 | 2.92 | -1.04 | 0.167 | -1.68 | -- | 8.95 | -0.191 | 16.2 | 1000 | 702 | -- | -- |
| 148.94 | 0.568 | 2.83 | -0.471 | 0.164 | -1.1 | -- | -- | -0.195 | 17.4 | 996.4 | 3774 | -- | -- |
| 144.69 | 0.56 | 2.91 | -1.03 | -- | -1.61 | -- | 8.57 | -0.2 | -- | 1000 | 702 | -- | -- |
| 156.59 | 0.587 | 2.83 | -0.526 | 0.144 | -- | -0.569 | -- | -0.221 | 18.1 | -- | -- | -- | -- |
| 157.33 | 0.587 | 2.83 | -0.519 | 0.145 | -- | -- | -- | -0.222 | 17.3 | -- | -- | -- | -- |
| 149.83 | 0.57 | 2.82 | -0.493 | -- | -1.12 | -- | -- | -0.19 | -- | 996.2 | 3619 | -- | -- |
| 154.69 | 0.579 | 2.81 | -- | 0.16 | -1.21 | -- | -- | -0.132 | 17.1 | 995.9 | 3977 | -- | -- |
| 158.43 | 0.588 | 2.83 | -0.524 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 164.44 | 0.6 | 2.82 | -- | 0.154 | -- | -- | -- | -0.165 | 17.2 | -- | -- | -- | -- |
| 156.05 | 0.582 | 2.81 | -- | -- | -1.21 | -- | -- | -0.137 | -- | 995.9 | 3880 | -- | -- |
| 165.68 | 0.601 | 2.82 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.94 | atmosphere | 995 | 4320 | < th | dose dependent | sin | 8 | NA |
| 2 | 140.01 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 12 | 140.09 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 23 | 11 |
| 13 | 140.12 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 16 | 2 |
| 15 | 140.16 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 13 | 5 |
| 17 | 140.19 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 7 |
| 18 | 140.20 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 18 | 1 |
| 25 | 140.38 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 13 | 2 |
| 28 | 140.40 | wind | 9 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 29 | 140.40 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 34 | 140.40 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 181 | 140.40 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 182 | 140.40 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 187 | 140.40 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 363 | 140.73 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 21 | 13 |
| 364 | 140.74 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 14 | 16 |
| 387 | 140.95 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 396 | 141.03 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 8 | 9 |
| 400 | 141.07 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 5 | 15 |
| 408 | 141.17 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 9 |
| 415 | 141.24 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 420 | 141.29 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 427 | 141.39 | atmosphere | 1000 | 720 | > th | dose independent | sin | 19 | NA |
| 437 | 141.46 | atmosphere | 1000 | 720 | < th | dose independent | sin | 20 | NA |
| 439 | 141.47 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 8 | 17 |
| 484 | 141.89 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 15 |
| 489 | 141.94 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 20 | 1 |
| 501 | 142.04 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 8 | 15 |
| 571 | 142.47 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 23 |
| 572 | 142.47 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 622 | 142.82 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 23 |
| 648 | 142.98 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 23 |
| 673 | 143.15 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 13 |
| 691 | 143.22 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 1 |
| 700 | 143.22 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 716 | 143.25 | atmosphere | 1000 | 720 | > th | dose independent | no | NA | NA |
| 817 | 143.79 | atmosphere | 1000 | 720 | < th | dose independent | no | NA | NA |
| 819 | 143.79 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 18 | 23 |
| 839 | 143.95 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 22 |
| 847 | 144.02 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 912 | 144.46 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 16 |
| 916 | 144.48 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 18 |
| 919 | 144.49 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 940 | 144.63 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 956 | 144.81 | atmosphere | 1005 | 720 | < th | dose dependent | sin | 16 | NA |
| 990 | 144.95 | atmosphere | 995 | 4320 | < th | dose independent | sin | 8 | NA |
| 991 | 144.95 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 994 | 144.99 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 1 | 1 |