Os10g0343900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin fold domain containing protein.
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Os10g0343900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.33 | 0.41 | 11.4 | -0.903 | 0.695 | -1.43 | -0.995 | -0.906 | -0.127 | 15.1 | 0.18 | 706 | -- | -- |
| 76.93 | 0.409 | 11.4 | -0.961 | 0.643 | -1.53 | -0.523 | -- | -0.151 | 14.7 | 0.17 | 707 | -- | -- |
| 77.96 | 0.411 | 11.4 | -0.94 | 0.653 | -1.46 | -- | 0.122 | -0.136 | 14.9 | 0.1894 | 703 | -- | -- |
| 77.87 | 0.411 | 11.4 | -0.972 | 0.629 | -1.57 | -- | -- | -0.146 | 14.6 | 0.1838 | 712 | -- | -- |
| 81.25 | 0.42 | 11.4 | -0.996 | -- | -1.9 | -- | 0.224 | -0.14 | -- | 0.19 | 602 | -- | -- |
| 82.54 | 0.426 | 11.5 | -0.827 | 1.77 | -- | -0.333 | -- | -0.0821 | 16.6 | -- | -- | -- | -- |
| 82.84 | 0.426 | 11.5 | -0.829 | 1.77 | -- | -- | -- | -0.0839 | 16.6 | -- | -- | -- | -- |
| 81.12 | 0.419 | 11.4 | -0.996 | -- | -1.93 | -- | -- | -0.171 | -- | 0.181 | 613 | -- | -- |
| 99 | 0.466 | 11.4 | -- | 1.89 | 0.278 | -- | -- | 0.00695 | 16 | 0.1838 | 712 | -- | -- |
| 248.79 | 0.737 | 11.4 | -0.897 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 100.95 | 0.47 | 11.4 | -- | 1.78 | -- | -- | -- | 0.00848 | 16.6 | -- | -- | -- | -- |
| 106.5 | 0.481 | 11.4 | -- | -- | -1.88 | -- | -- | -0.0716 | -- | 0.73 | 598 | -- | -- |
| 270.01 | 0.767 | 11.4 | -- | -- | -- | -- | -- | -0.0307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 4 | 65.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 12 | 67.03 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 18 | 67.56 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 21 | 67.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 33 | 68.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 34 | 68.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 35 | 68.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 36 | 68.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 40 | 68.17 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 41 | 68.20 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 46 | 68.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 48 | 68.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 49 | 68.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 52 | 68.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 53 | 68.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 57 | 68.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 58 | 68.27 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 61 | 68.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 67 | 68.34 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 78 | 68.52 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 85 | 68.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 110 | 68.87 | wind | 9.0 | 270 | < th | dose dependent | rect. | 20 | 6 |
| 123 | 68.99 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 124 | 69.00 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 126 | 69.01 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 150 | 69.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 155 | 69.17 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 161 | 69.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 166 | 69.23 | wind | 7.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 228 | 69.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 235 | 69.60 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 254 | 69.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 264 | 69.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 267 | 69.74 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 288 | 69.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 292 | 69.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 293 | 69.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 295 | 69.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 296 | 69.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 297 | 69.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 305 | 69.99 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 307 | 70.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 311 | 70.01 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 322 | 70.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 5 |
| 326 | 70.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 333 | 70.10 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 350 | 70.21 | humidity | 60.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 366 | 70.27 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 385 | 70.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 386 | 70.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 387 | 70.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 390 | 70.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 391 | 70.32 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 398 | 70.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 408 | 70.34 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 426 | 70.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 438 | 70.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 440 | 70.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 441 | 70.40 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 442 | 70.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 447 | 70.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 462 | 70.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 473 | 70.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 474 | 70.48 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 475 | 70.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 479 | 70.50 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 480 | 70.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 483 | 70.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 487 | 70.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 492 | 70.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 493 | 70.50 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 495 | 70.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 504 | 70.55 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 505 | 70.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 18 |
| 507 | 70.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 514 | 70.59 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 561 | 70.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 569 | 70.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 579 | 70.70 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 6 |
| 581 | 70.71 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 5 |
| 583 | 70.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 634 | 70.79 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 656 | 70.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 696 | 70.88 | wind | 1.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 725 | 70.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 728 | 70.93 | temperature | 15.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 741 | 70.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 745 | 70.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 750 | 70.97 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 753 | 70.97 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 754 | 70.97 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 756 | 70.97 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 763 | 70.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 778 | 71.02 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 809 | 71.04 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 827 | 71.07 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 832 | 71.09 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 833 | 71.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 869 | 71.12 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 17 |
| 880 | 71.12 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 893 | 71.14 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 14 |
| 906 | 71.16 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 913 | 71.17 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 2 |
| 943 | 71.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |