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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0342300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.64 (0.0426) R2 : 0.314
β1 : 1.7 (0.159) R2dD : 0.186 R2D : 0.19
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.14 (0.162) R2dE : 0.0813 R2E : 0.097
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.527 (0.0919) R2dN8 : 0.0682 R2N8 : -0.011
σ : 0.794
deviance : 290.97
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 11437
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.81 0.767 5.57 2.09 0.402 -0.0611 0.744 6.26 0.441 3.64 1005 11868 -- --
280.71 0.78 5.63 1.76 0.445 1.14 0.953 -- 0.558 3.19 1000 11479 -- --
268.32 0.763 5.58 2.12 0.403 -0.0566 -- 6.25 0.438 3.34 1005 11810 -- --
280.93 0.781 5.64 1.68 0.419 1.16 -- -- 0.516 3.12 1000 11532 -- --
277.39 0.776 5.58 2.17 -- -0.105 -- 6.46 0.446 -- 1005 11710 -- --
312.33 0.829 5.66 1.92 0.403 -- 0.612 -- 0.415 3.51 -- -- -- --
313.44 0.829 5.66 1.91 0.405 -- -- -- 0.412 3.23 -- -- -- --
290.97 0.794 5.64 1.7 -- 1.14 -- -- 0.527 -- 1000 11437 -- --
351.48 0.873 5.67 -- 0.461 1.5 -- -- 0.376 3.18 1000 11803 -- --
322.73 0.839 5.66 1.92 -- -- -- -- 0.422 -- -- -- -- --
409.36 0.946 5.71 -- 0.442 -- -- -- 0.199 3.23 -- -- -- --
363.55 0.888 5.67 -- -- 1.49 -- -- 0.384 -- 1000 11768 -- --
420.46 0.957 5.71 -- -- -- -- -- 0.209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.52 wind 5.0 14400 > th dose independent rect. 14 16
4 264.89 wind 5.0 14400 < th dose independent rect. 14 16
8 265.41 wind 5.0 14400 > th dose independent rect. 14 8
10 265.46 atmosphere 995.0 14400 > th dose independent rect. 11 2
12 265.54 wind 5.0 14400 > th dose independent rect. 15 6
14 265.69 atmosphere 995.0 14400 > th dose independent rect. 6 13
25 266.06 wind 5.0 14400 < th dose independent rect. 15 7
33 266.24 wind 5.0 14400 > th dose dependent rect. 14 7
34 266.25 wind 7.0 14400 < th dose independent rect. 14 1
40 266.44 wind 9.0 4320 > th dose dependent rect. 17 4
50 266.63 wind 9.0 4320 > th dose independent rect. 17 4
57 266.74 wind 7.0 14400 > th dose independent rect. 14 1
58 266.80 atmosphere 995.0 14400 < th dose independent rect. 14 8
68 266.81 wind 5.0 14400 > th dose dependent rect. 16 2
70 266.91 atmosphere 995.0 14400 < th dose dependent rect. 14 8
92 267.22 wind 5.0 14400 > th dose independent sin 15 NA
98 267.31 wind 5.0 14400 < th dose independent sin 15 NA
99 267.35 precipitation 0.1 4320 > th dose dependent rect. 17 1
105 267.50 atmosphere 995.0 14400 > th dose independent rect. 10 12
106 267.53 atmosphere 995.0 14400 > th dose independent rect. 9 4
107 267.54 atmosphere 995.0 14400 > th dose independent rect. 12 10
114 267.61 atmosphere 995.0 14400 > th dose independent rect. 17 1
117 267.73 wind 9.0 14400 > th dose independent rect. 17 2
122 267.88 wind 9.0 4320 < th dose independent rect. 17 4
125 267.90 atmosphere 995.0 14400 < th dose independent rect. 5 14
130 268.01 wind 5.0 14400 > th dose dependent rect. 14 1
133 268.05 atmosphere 1005.0 14400 < th dose independent rect. 6 2
142 268.24 atmosphere 995.0 14400 < th dose independent sin 22 NA
145 268.25 atmosphere 995.0 14400 > th dose independent rect. 6 7
150 268.29 atmosphere 995.0 14400 < th dose dependent rect. 5 11
153 268.33 wind 5.0 14400 > th dose dependent rect. 14 11
156 268.41 atmosphere 995.0 14400 > th dose independent sin 22 NA
160 268.43 precipitation 0.1 4320 < th dose independent rect. 17 1
162 268.43 precipitation 0.1 4320 < th dose dependent rect. 17 1
167 268.49 atmosphere 1005.0 14400 > th dose independent rect. 6 1
177 268.66 atmosphere 995.0 14400 < th dose dependent rect. 5 14
180 268.67 precipitation 0.1 4320 > th dose independent rect. 17 1
183 268.69 wind 9.0 14400 < th dose independent rect. 17 2
211 268.92 wind 3.0 14400 > th dose dependent rect. 16 6
245 269.31 wind 5.0 14400 > th dose dependent rect. 14 16
250 269.36 precipitation 0.1 4320 > th dose dependent rect. 14 4
283 269.78 atmosphere 995.0 14400 > th dose independent rect. 13 6
285 269.81 atmosphere 995.0 14400 < th dose independent rect. 16 1
291 269.88 atmosphere 995.0 14400 < th dose dependent rect. 16 1
361 270.29 atmosphere 995.0 14400 > th dose independent rect. 10 9
403 270.54 atmosphere 995.0 14400 < th dose dependent sin 22 NA
553 271.25 atmosphere 1000.0 14400 < th dose dependent rect. 20 1
625 271.47 wind 5.0 14400 < th dose independent rect. 16 2
666 271.62 atmosphere 995.0 14400 > th dose independent rect. 19 21
722 271.86 atmosphere 1000.0 14400 < th dose dependent rect. 20 7
803 272.18 atmosphere 1000.0 14400 < th dose dependent rect. 1 2
842 272.32 wind 9.0 4320 < th dose independent rect. 17 8
957 272.61 atmosphere 1000.0 14400 < th dose dependent sin 11 NA
966 272.63 wind 5.0 14400 > th dose dependent sin 15 NA