Os10g0340800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0340800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.69 | 0.401 | 13.2 | -0.392 | 1.17 | -1.24 | -0.499 | -1.22 | 0.248 | 21.2 | 30.84 | 96 | -- | -- |
| 74.67 | 0.402 | 13.2 | -0.591 | 1.16 | -1.42 | -0.665 | -- | 0.221 | 21.2 | 67.05 | 100 | -- | -- |
| 73.54 | 0.399 | 13.2 | -0.367 | 1.16 | -1.23 | -- | -1.29 | 0.245 | 21.2 | 30.49 | 99 | -- | -- |
| 76.21 | 0.407 | 13.2 | -0.559 | 1.17 | -1.38 | -- | -- | 0.226 | 21.1 | 89.03 | 93 | -- | -- |
| 116.88 | 0.504 | 13.2 | -0.814 | -- | -1.99 | -- | 0.367 | 0.0949 | -- | 36.51 | 577 | -- | -- |
| 94.48 | 0.456 | 13.1 | -0.287 | 1.23 | -- | -0.372 | -- | 0.42 | 19.9 | -- | -- | -- | -- |
| 94.87 | 0.456 | 13.1 | -0.276 | 1.24 | -- | -- | -- | 0.42 | 19.9 | -- | -- | -- | -- |
| 116.98 | 0.504 | 13.2 | -0.75 | -- | -1.99 | -- | -- | 0.112 | -- | 53.62 | 574 | -- | -- |
| 83.61 | 0.426 | 13.2 | -- | 1.17 | -1.1 | -- | -- | 0.321 | 20.8 | 101.2 | 91 | -- | -- |
| 177.85 | 0.623 | 13.1 | -0.29 | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
| 96.88 | 0.46 | 13.1 | -- | 1.24 | -- | -- | -- | 0.45 | 19.9 | -- | -- | -- | -- |
| 130.49 | 0.532 | 13.1 | -- | -- | -1.72 | -- | -- | 0.228 | -- | 66.27 | 555 | -- | -- |
| 180.07 | 0.626 | 13.1 | -- | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 2 | 63.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 108 | 71.06 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 110 | 71.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 148 | 72.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 161 | 72.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 162 | 72.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 180 | 72.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 194 | 72.81 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 197 | 72.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 240 | 73.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 245 | 73.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 246 | 73.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 249 | 73.44 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 257 | 73.60 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 258 | 73.60 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 7 | 22 |
| 263 | 73.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 293 | 74.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 306 | 74.11 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 326 | 74.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 327 | 74.25 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 345 | 74.30 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 351 | 74.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 357 | 74.35 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 375 | 74.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 386 | 74.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 392 | 74.56 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 407 | 74.65 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 458 | 74.80 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 527 | 75.04 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 2 |
| 538 | 75.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 668 | 75.44 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 677 | 75.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 689 | 75.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 690 | 75.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 701 | 75.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 717 | 75.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 731 | 75.63 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 754 | 75.67 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 757 | 75.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 771 | 75.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 833 | 75.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 869 | 75.94 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 890 | 75.99 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 912 | 76.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 963 | 76.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |