Os10g0340100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os10g0340100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.22 | 0.511 | 5.35 | -1.78 | 0.885 | -1.36 | 2.71 | -3.05 | -2.18 | 0.791 | 1.095 | 4103 | -- | -- |
| 124.59 | 0.52 | 5.32 | -1.33 | 0.893 | -1.29 | 2.03 | -- | -2.11 | 0.521 | 1.24 | 3995 | -- | -- |
| 129.58 | 0.53 | 5.31 | -1.72 | 0.346 | -1.46 | -- | -2.81 | -2.09 | 0.664 | 1.039 | 9109 | -- | -- |
| 141.92 | 0.555 | 5.32 | -1.37 | 0.855 | -1.16 | -- | -- | -2.1 | 0.997 | 1.147 | 4006 | -- | -- |
| 133.73 | 0.539 | 5.33 | -1.83 | -- | -1.72 | -- | -3.12 | -2.16 | -- | 1.09 | 9080 | -- | -- |
| 139.75 | 0.554 | 5.33 | -1.52 | 0.657 | -- | 2.01 | -- | -2.27 | 2.3 | -- | -- | -- | -- |
| 153.77 | 0.581 | 5.34 | -1.57 | 0.684 | -- | -- | -- | -2.29 | 3.02 | -- | -- | -- | -- |
| 143.7 | 0.558 | 5.29 | -1.39 | -- | -1.08 | -- | -- | -2.04 | -- | 1.95 | 4716 | -- | -- |
| 175.17 | 0.616 | 5.29 | -- | 0.388 | -1.41 | -- | -- | -1.87 | 0.726 | 0.55 | 13579 | -- | -- |
| 180.61 | 0.628 | 5.34 | -1.54 | -- | -- | -- | -- | -2.27 | -- | -- | -- | -- | -- |
| 219 | 0.692 | 5.3 | -- | 0.653 | -- | -- | -- | -2.11 | 3.01 | -- | -- | -- | -- |
| 157.15 | 0.584 | 5.2 | -- | -- | -1.68 | -- | -- | -1.7 | -- | 0.67 | 24965 | -- | -- |
| 243.5 | 0.728 | 5.3 | -- | -- | -- | -- | -- | -2.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.07 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 4 | 108.21 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 5 | 108.23 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 10 | 108.44 | humidity | 80.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 13 | 108.56 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 26 | 108.73 | humidity | 80.0 | 43200 | < th | dose independent | sin | 19 | NA |
| 31 | 108.81 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 35 | 108.87 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 36 | 108.89 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 8 | 15 |
| 42 | 108.93 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 44 | 108.94 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 4 | 19 |
| 63 | 109.06 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 68 | 109.10 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 104 | 109.28 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 116 | 109.34 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 7 | 10 |
| 143 | 109.45 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 237 | 109.82 | humidity | 80.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 238 | 109.82 | humidity | 80.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 315 | 110.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 334 | 110.22 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 337 | 110.23 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 398 | 110.45 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 402 | 110.47 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 412 | 110.49 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 456 | 110.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 462 | 110.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 463 | 110.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 469 | 110.61 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 511 | 110.68 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 522 | 110.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 525 | 110.70 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 546 | 110.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 554 | 110.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 569 | 110.78 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 577 | 110.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 592 | 110.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 593 | 110.82 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 594 | 110.82 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 597 | 110.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 608 | 110.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 610 | 110.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 613 | 110.84 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 614 | 110.85 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 620 | 110.85 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 717 | 111.00 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 820 | 111.16 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 834 | 111.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 866 | 111.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |