Os10g0339600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0339600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.08 | 0.216 | 11.8 | -0.316 | 0.525 | -0.582 | 0.169 | 2.3 | 0.0955 | 5.14 | 16.09 | 3074 | -- | -- |
| 24.16 | 0.229 | 11.8 | -0.701 | 0.519 | -0.742 | 0.259 | -- | 0.0474 | 5.08 | 5.153 | 10624 | -- | -- |
| 21.09 | 0.214 | 11.8 | -0.321 | 0.522 | -0.569 | -- | 2.28 | 0.0943 | 5.08 | 16.41 | 2946 | -- | -- |
| 24.29 | 0.23 | 11.8 | -0.699 | 0.523 | -0.746 | -- | -- | 0.0499 | 5.11 | 5.037 | 10672 | -- | -- |
| 32.92 | 0.267 | 11.8 | -0.237 | -- | -0.681 | -- | 2.59 | 0.142 | -- | 18.36 | 1887 | -- | -- |
| 33.23 | 0.27 | 11.9 | -1.15 | 0.511 | -- | 0.24 | -- | -0.185 | 5.3 | -- | -- | -- | -- |
| 33.37 | 0.271 | 11.9 | -1.15 | 0.512 | -- | -- | -- | -0.186 | 5.29 | -- | -- | -- | -- |
| 36.54 | 0.283 | 11.9 | -0.976 | -- | -0.855 | -- | -- | -0.0598 | -- | 5.037 | 10672 | -- | -- |
| 28.98 | 0.251 | 11.8 | -- | 0.523 | -1.01 | -- | -- | 0.243 | 5.15 | 3.565 | 47520 | -- | -- |
| 47.08 | 0.321 | 11.9 | -1.13 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 68.21 | 0.386 | 11.9 | -- | 0.493 | -- | -- | -- | -0.0584 | 5.38 | -- | -- | -- | -- |
| 43.26 | 0.306 | 11.8 | -- | -- | -0.986 | -- | -- | 0.247 | -- | 0.2498 | 47520 | -- | -- |
| 80.88 | 0.42 | 11.9 | -- | -- | -- | -- | -- | -0.048 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 11 | 19.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 42 | 19.69 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 65 | 19.74 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 71 | 19.75 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 118 | 19.81 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 133 | 19.81 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 185 | 19.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 190 | 19.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 191 | 19.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 208 | 19.96 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 218 | 19.97 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 236 | 20.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 249 | 20.03 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 292 | 20.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 312 | 20.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 14 |
| 316 | 20.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 345 | 20.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 418 | 20.29 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 445 | 20.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 454 | 20.33 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 507 | 20.44 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 508 | 20.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 514 | 20.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 515 | 20.46 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 522 | 20.48 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 526 | 20.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 536 | 20.50 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 540 | 20.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 543 | 20.52 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 552 | 20.54 | humidity | 90 | 14400 | < th | dose independent | sin | 12 | NA |
| 556 | 20.55 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 570 | 20.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 590 | 20.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 598 | 20.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 14 |
| 633 | 20.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 650 | 20.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 659 | 20.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 661 | 20.69 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 686 | 20.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 693 | 20.71 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 699 | 20.72 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 705 | 20.72 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 712 | 20.72 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 782 | 20.77 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 829 | 20.81 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 831 | 20.81 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 832 | 20.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 851 | 20.82 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 864 | 20.83 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 866 | 20.83 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 880 | 20.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 881 | 20.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 903 | 20.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 929 | 20.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 958 | 20.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 969 | 20.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 982 | 20.92 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |