Os10g0338500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0338500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.64 | 0.331 | 8.64 | 1.21 | 1.17 | 2.52 | -0.969 | 0.587 | -0.0103 | 19.2 | 20.58 | 5915 | -- | -- |
| 49.93 | 0.329 | 8.64 | 1.24 | 1.15 | 2.34 | -1.02 | -- | -0.016 | 19.2 | 20.58 | 5941 | -- | -- |
| 52.05 | 0.336 | 8.65 | 1.23 | 1.18 | 2.67 | -- | 0.843 | -0.0194 | 19.2 | 20.29 | 5848 | -- | -- |
| 52.19 | 0.336 | 8.63 | 1.24 | 1.17 | 2.3 | -- | -- | -0.00887 | 19.2 | 20.64 | 5839 | -- | -- |
| 123.97 | 0.519 | 8.64 | 1.23 | -- | 2.92 | -- | 1.25 | -0.0402 | -- | 20.1 | 5730 | -- | -- |
| 94.94 | 0.457 | 8.72 | 0.139 | 1.19 | -- | -1.1 | -- | -0.391 | 19.2 | -- | -- | -- | -- |
| 98.14 | 0.464 | 8.72 | 0.162 | 1.19 | -- | -- | -- | -0.393 | 19.1 | -- | -- | -- | -- |
| 124.25 | 0.519 | 8.61 | 1.21 | -- | 2.33 | -- | -- | -0.0401 | -- | 20.59 | 5736 | -- | -- |
| 71.28 | 0.395 | 8.7 | -- | 1.19 | 1.85 | -- | -- | -0.308 | 18.7 | 20.64 | 5839 | -- | -- |
| 172.73 | 0.614 | 8.69 | 0.14 | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
| 98.83 | 0.465 | 8.72 | -- | 1.19 | -- | -- | -- | -0.411 | 19.2 | -- | -- | -- | -- |
| 145.16 | 0.563 | 8.67 | -- | -- | 1.83 | -- | -- | -0.33 | -- | 20.64 | 5839 | -- | -- |
| 173.24 | 0.614 | 8.69 | -- | -- | -- | -- | -- | -0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.16 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 2 | 48.54 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 15 | 50.20 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 16 | 50.21 | temperature | 20 | 4320 | < th | dose dependent | sin | 13 | NA |
| 35 | 50.28 | temperature | 20 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 49 | 50.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 158 | 50.66 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 175 | 50.73 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 181 | 50.75 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 184 | 50.78 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 214 | 50.94 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 264 | 51.26 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 292 | 51.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 296 | 51.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 297 | 51.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 327 | 51.69 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 330 | 51.71 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 332 | 51.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 349 | 51.82 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 351 | 51.83 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 353 | 51.86 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 356 | 51.87 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 357 | 51.87 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 364 | 51.90 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 378 | 51.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 409 | 52.05 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 412 | 52.08 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 414 | 52.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 415 | 52.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 432 | 52.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 440 | 52.20 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 447 | 52.22 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 457 | 52.26 | wind | 5 | 43200 | < th | dose independent | sin | 11 | NA |
| 483 | 52.34 | wind | 5 | 43200 | > th | dose independent | sin | 11 | NA |
| 486 | 52.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 501 | 52.37 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 524 | 52.44 | wind | 7 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 526 | 52.44 | wind | 3 | 43200 | > th | dose dependent | sin | 11 | NA |
| 528 | 52.45 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 555 | 52.49 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 565 | 52.53 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 574 | 52.55 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 623 | 52.65 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 646 | 52.69 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 677 | 52.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 683 | 52.77 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 694 | 52.80 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 707 | 52.83 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 724 | 52.86 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 729 | 52.87 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 738 | 52.89 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 755 | 52.92 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 782 | 52.96 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 800 | 52.99 | wind | 7 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 814 | 53.00 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 901 | 53.13 | wind | 7 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 925 | 53.15 | wind | 7 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 932 | 53.16 | humidity | 70 | 43200 | < th | dose dependent | sin | 12 | NA |
| 935 | 53.16 | wind | 7 | 43200 | < th | dose dependent | rect. | 19 | 16 |