FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0337400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0198) R2 : 0.019
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.124 (0.0416) R2dN8 : 0.0245 R2N8 : 0.019
σ : 0.372
deviance : 63.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.16 0.358 2.92 -0.0763 0.0249 -0.483 0.104 1.56 0.111 17.3 1.1 16 -- --
60.16 0.361 2.91 -0.0174 0.00682 -0.371 0.28 -- 0.129 17 1.1 16 -- --
58.18 0.355 2.92 -0.0776 0.0266 -0.481 -- 1.59 0.112 18.6 1.084 16 -- --
60.34 0.362 2.91 -0.0145 0.0102 -0.361 -- -- 0.127 20.4 1.045 16 -- --
58.21 0.355 2.92 -0.0761 -- -0.468 -- 1.57 0.111 -- 1.078 16 -- --
63.02 0.372 2.91 0.0278 0.0964 -- -0.215 -- 0.124 3.93 -- -- -- --
63.16 0.372 2.91 0.0306 0.0952 -- -- -- 0.125 3.96 -- -- -- --
60.34 0.362 2.91 -0.0128 -- -0.359 -- -- 0.129 -- 1.073 16 -- --
60.34 0.362 2.91 -- 0.0102 -0.359 -- -- 0.13 20.9 1.072 16 -- --
63.65 0.373 2.91 0.0345 -- -- -- -- 0.128 -- -- -- -- --
63.18 0.372 2.91 -- 0.0958 -- -- -- 0.122 3.95 -- -- -- --
60.35 0.362 2.91 -- -- -0.357 -- -- 0.13 -- 1.073 16 -- --
63.69 0.372 2.91 -- -- -- -- -- 0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.91 temperature 20.0 30 > th dose dependent rect. 2 1
3 46.93 wind 3.0 30 < th dose independent rect. 2 1
5 46.94 wind 5.0 30 < th dose dependent rect. 2 1
11 46.95 temperature 10.0 30 > th dose independent rect. 2 1
14 46.95 temperature 30.0 30 < th dose independent rect. 2 1
15 46.95 humidity 50.0 30 > th dose independent rect. 2 1
19 46.95 atmosphere 995.0 30 > th dose independent rect. 2 1
20 46.95 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 46.95 radiation 1.0 30 < th dose independent rect. 2 1
27 46.95 precipitation 0.1 30 < th dose independent rect. 2 1
28 46.95 temperature 10.0 30 > th dose independent rect. 3 23
30 46.95 humidity 50.0 30 > th dose dependent rect. 2 1
33 46.95 radiation 1.0 30 < th dose dependent rect. 2 1
38 46.95 precipitation 0.1 30 < th dose dependent rect. 2 1
41 46.98 atmosphere 1005.0 30 > th dose independent rect. 2 1
42 46.98 atmosphere 995.0 30 > th dose dependent rect. 2 1
46 47.01 wind 9.0 30 < th dose independent rect. 3 23
47 47.01 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 47.10 temperature 30.0 30 < th dose dependent rect. 2 1
54 47.21 wind 1.0 30 > th dose independent rect. 2 1
109 49.64 precipitation 0.1 30 < th dose independent rect. 3 23
110 49.64 precipitation 0.1 30 < th dose dependent rect. 3 23
111 50.06 atmosphere 995.0 30 > th dose independent rect. 3 23
126 51.59 radiation 1.0 43200 < th dose dependent rect. 3 1
132 51.62 wind 9.0 1440 < th dose independent rect. 3 1
133 51.62 temperature 10.0 1440 > th dose independent rect. 3 1
136 51.62 temperature 30.0 1440 < th dose independent rect. 3 1
140 51.62 humidity 50.0 1440 > th dose independent rect. 3 1
149 51.62 atmosphere 995.0 1440 > th dose independent rect. 3 1
150 51.62 radiation 1.0 1440 < th dose independent rect. 3 1
170 51.62 temperature 10.0 1440 > th dose independent rect. 4 23
173 51.62 radiation 1.0 1440 < th dose dependent rect. 3 1
199 52.78 humidity 50.0 30 > th dose independent rect. 3 23
243 54.28 atmosphere 1015.0 30 < th dose independent rect. 3 23
272 55.45 humidity 90.0 90 < th dose independent rect. 2 1
284 56.15 wind 1.0 30 > th dose dependent rect. 2 1
286 56.17 atmosphere 1015.0 1440 < th dose independent rect. 3 1
287 56.18 wind 1.0 10 < th dose independent rect. 17 10
344 56.77 temperature 30.0 30 < th dose independent rect. 3 23
363 57.06 wind 1.0 10 < th dose independent rect. 7 20
377 57.30 wind 1.0 30 > th dose independent rect. 3 23
385 57.43 wind 1.0 10 > th dose independent sin 16 NA
386 57.43 temperature 25.0 270 > th dose independent rect. 23 4
409 57.63 humidity 90.0 10 > th dose independent rect. 24 3
410 57.63 temperature 10.0 720 > th dose independent rect. 15 8
411 57.63 temperature 10.0 720 > th dose independent rect. 23 16
419 57.68 wind 9.0 720 < th dose independent rect. 3 8
422 57.70 wind 9.0 30 < th dose dependent rect. 3 23
425 57.73 temperature 10.0 720 > th dose independent rect. 3 8
426 57.73 atmosphere 995.0 720 > th dose independent rect. 3 8
427 57.73 temperature 10.0 720 > th dose independent rect. 11 16
457 58.03 humidity 50.0 720 > th dose independent rect. 3 8
459 58.06 atmosphere 1015.0 720 < th dose independent rect. 3 8
465 58.11 radiation 40.0 720 < th dose independent rect. 15 8
488 58.26 wind 3.0 30 < th dose dependent rect. 21 6
490 58.26 wind 3.0 30 < th dose dependent rect. 17 10
524 58.38 atmosphere 995.0 720 > th dose independent rect. 23 16
529 58.45 wind 3.0 30 < th dose dependent rect. 13 14
547 58.56 wind 1.0 10 > th dose independent rect. 23 23
551 58.59 atmosphere 995.0 30 > th dose dependent rect. 3 23
555 58.62 precipitation 0.1 720 < th dose independent rect. 15 8
557 58.62 precipitation 0.1 720 < th dose dependent rect. 15 8
581 58.75 wind 9.0 720 < th dose independent rect. 23 16
595 58.83 radiation 10.0 30 < th dose dependent rect. 3 23
629 58.89 temperature 25.0 270 > th dose dependent rect. 23 7
669 58.96 wind 9.0 720 < th dose independent rect. 15 8
670 58.96 atmosphere 995.0 720 > th dose independent rect. 15 8
678 59.01 temperature 10.0 30 > th dose dependent rect. 3 23
684 59.03 atmosphere 995.0 720 > th dose independent rect. 11 16
686 59.03 radiation 40.0 30 < th dose dependent rect. 3 23
688 59.04 radiation 1.0 30 < th dose independent rect. 3 23
710 59.09 precipitation 0.1 720 < th dose independent rect. 11 16
711 59.09 precipitation 0.1 720 < th dose dependent rect. 11 16
726 59.12 precipitation 0.1 720 < th dose independent rect. 3 8
727 59.12 precipitation 0.1 720 < th dose dependent rect. 3 8
745 59.22 wind 1.0 10 > th dose independent no NA NA
836 59.31 precipitation 0.1 720 < th dose independent rect. 23 16
840 59.31 precipitation 0.1 720 < th dose dependent rect. 23 16
852 59.37 wind 1.0 10 < th dose independent sin 16 NA
907 59.48 humidity 50.0 30 > th dose dependent rect. 3 23
928 59.60 wind 1.0 10 > th dose independent rect. 14 23
944 59.67 wind 1.0 10 < th dose independent rect. 2 6
957 59.71 humidity 50.0 720 > th dose independent rect. 23 16
963 59.73 radiation 40.0 10 < th dose dependent rect. 14 12
980 59.79 wind 1.0 10 > th dose independent rect. 18 13
983 59.80 wind 1.0 720 > th dose independent rect. 15 8
994 59.84 wind 1.0 10 > th dose independent rect. 16 15
997 59.86 wind 9.0 90 < th dose independent rect. 3 10