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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0328600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0907) R2 : 0.171
β1 : -3.77 (0.436) R2dD : 0.252 R2D : -0.0247
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.76 (0.461) R2dE : 0.0285 R2E : -0.0133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.9 (2.28) R2dD*E : 0.155 R2D*E : -0.108
γ1 : 0.398 (0.191) R2dN8 : 0.0106 R2N8 : 0.0149
σ : 1.67
deviance : 1284.88
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.22
memory length : 1442
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 10.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1271.24 1.68 4.36 -4.01 0.187 1.52 -2.12 16.1 0.375 3.94 1.07 1442 18 10.1
1364.26 1.72 4.36 -2.15 0.0858 1.95 -0.72 -- 0.383 3.32 6.551 1439 17.5 7.71
1282.8 1.67 4.36 -3.84 0.193 1.66 -- 15.9 0.392 1.81 1.17 1442 18 10.2
1360.45 1.72 4.38 -2.12 0.23 2.06 -- -- 0.518 22.3 6.42 1438 17.5 5.69
1284.88 1.67 4.36 -3.77 -- 1.76 -- 15.9 0.398 -- 1.22 1442 18 10.3
1433.89 1.78 4.47 -1.62 0.0629 -- 1.91 -- 0.48 18 -- -- -- --
1441.98 1.78 4.46 -1.64 0.14 -- -- -- 0.485 21.9 -- -- -- --
1360.45 1.72 4.43 -2.05 -- 1.97 -- -- 0.534 -- 6.286 1439 17.5 9.31
1465.67 1.78 4.38 -- 0.232 1.42 -- -- 0.731 21.9 4.97 1436 17.5 7.36
1443.16 1.78 4.46 -1.64 -- -- -- -- 0.485 -- -- -- -- --
1513.25 1.82 4.42 -- 0.139 -- -- -- 0.668 21 -- -- -- --
1465.77 1.78 4.41 -- -- 1.42 -- -- 0.721 -- 5.11 1441 17.4 7.97
1514.36 1.82 4.42 -- -- -- -- -- 0.668 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1276.86 wind 1.0 14400 > th dose independent rect. 20 3
2 1276.94 radiation 1.0 1440 < th dose dependent rect. 18 10
8 1279.17 radiation 1.0 1440 < th dose independent rect. 18 9
9 1279.19 radiation 1.0 1440 < th dose dependent rect. 18 3
12 1279.60 radiation 1.0 1440 < th dose independent rect. 18 7
16 1280.56 radiation 1.0 1440 < th dose independent rect. 18 3
17 1280.57 radiation 1.0 1440 < th dose dependent rect. 18 1
18 1280.75 radiation 30.0 4320 < th dose independent rect. 17 15
20 1280.87 radiation 30.0 4320 < th dose independent rect. 19 13
21 1280.87 radiation 30.0 4320 > th dose independent rect. 16 16
22 1280.91 radiation 30.0 4320 < th dose independent rect. 7 1
26 1282.29 radiation 30.0 4320 < th dose independent rect. 23 9
28 1282.62 radiation 30.0 4320 < th dose independent rect. 2 6
29 1282.66 radiation 30.0 4320 > th dose independent rect. 7 1
44 1282.79 radiation 30.0 4320 < th dose independent rect. 4 4
45 1282.82 radiation 1.0 1440 < th dose independent rect. 18 1
50 1283.14 radiation 1.0 1440 > th dose independent rect. 18 1
66 1285.84 atmosphere 1000.0 43200 > th dose independent rect. 3 3
67 1286.04 temperature 25.0 14400 > th dose dependent rect. 4 1
68 1286.17 atmosphere 1000.0 43200 < th dose independent rect. 3 3
86 1289.86 temperature 30.0 1440 < th dose independent rect. 15 21
87 1290.14 temperature 20.0 1440 > th dose dependent rect. 19 1
88 1290.18 atmosphere 1000.0 43200 > th dose independent rect. 16 1
93 1290.54 atmosphere 1000.0 43200 < th dose independent rect. 16 1
102 1290.99 temperature 30.0 1440 > th dose independent rect. 15 21
111 1291.53 precipitation 0.1 43200 > th dose independent rect. 20 1
116 1291.73 precipitation 0.1 43200 < th dose independent rect. 20 1
118 1291.73 precipitation 0.1 43200 < th dose dependent rect. 20 1
122 1291.87 wind 1.0 14400 < th dose dependent rect. 20 3
123 1291.89 atmosphere 1000.0 43200 < th dose dependent rect. 5 1
166 1292.94 atmosphere 1000.0 43200 > th dose independent rect. 15 17
185 1293.21 atmosphere 1000.0 43200 > th dose independent sin 9 NA
213 1293.66 atmosphere 1000.0 43200 < th dose independent sin 9 NA
227 1293.78 atmosphere 1000.0 43200 < th dose independent rect. 15 16
305 1294.48 temperature 30.0 1440 > th dose dependent rect. 11 2
317 1294.61 temperature 30.0 1440 > th dose dependent rect. 9 4
339 1294.70 temperature 25.0 1440 > th dose dependent rect. 21 1
361 1294.86 atmosphere 1000.0 43200 > th dose independent rect. 20 22
379 1295.04 temperature 25.0 1440 > th dose dependent rect. 18 4
411 1295.19 temperature 30.0 1440 > th dose dependent sin 7 NA
413 1295.24 temperature 30.0 1440 < th dose independent sin 5 NA
417 1295.25 atmosphere 1000.0 43200 > th dose independent rect. 15 8
471 1295.56 temperature 30.0 1440 < th dose independent rect. 18 23
472 1295.57 atmosphere 1000.0 43200 > th dose independent rect. 24 23
480 1295.60 atmosphere 1000.0 43200 > th dose independent no NA NA
488 1295.64 atmosphere 1000.0 43200 < th dose independent rect. 20 22
546 1295.96 temperature 30.0 1440 < th dose independent sin 10 NA
605 1296.22 temperature 30.0 1440 < th dose independent rect. 4 8
613 1296.26 temperature 30.0 1440 < th dose independent rect. 2 10
617 1296.28 temperature 30.0 1440 < th dose independent rect. 23 13
622 1296.30 temperature 30.0 1440 < th dose independent rect. 4 16
624 1296.31 temperature 30.0 1440 < th dose independent rect. 4 18
626 1296.32 temperature 30.0 1440 < th dose independent rect. 2 18
628 1296.33 temperature 30.0 1440 < th dose independent rect. 6 14
630 1296.33 temperature 30.0 1440 < th dose independent rect. 2 20
631 1296.33 temperature 30.0 1440 < th dose independent rect. 23 21
636 1296.34 temperature 30.0 1440 < th dose independent rect. 23 23
659 1296.39 temperature 30.0 1440 < th dose independent rect. 4 23
664 1296.40 temperature 30.0 1440 < th dose independent rect. 4 20
668 1296.42 temperature 30.0 1440 < th dose independent rect. 6 6
676 1296.43 temperature 30.0 1440 < th dose independent rect. 6 21
684 1296.44 temperature 30.0 1440 < th dose independent rect. 21 23
707 1296.49 temperature 30.0 1440 < th dose independent rect. 2 15
709 1296.50 temperature 30.0 1440 < th dose independent no NA NA
710 1296.50 temperature 30.0 1440 > th dose independent rect. 9 3
712 1296.50 temperature 30.0 1440 < th dose independent rect. 6 11
714 1296.50 temperature 30.0 1440 < th dose independent rect. 23 18
716 1296.50 temperature 30.0 1440 < th dose independent rect. 8 23
776 1296.64 atmosphere 1000.0 43200 < th dose independent rect. 15 8
781 1296.65 atmosphere 1000.0 43200 < th dose independent no NA NA
786 1296.66 atmosphere 1000.0 43200 < th dose independent rect. 23 23
788 1296.67 temperature 30.0 1440 < th dose independent rect. 19 17
790 1296.68 temperature 30.0 1440 < th dose independent rect. 8 12
819 1296.73 temperature 30.0 1440 < th dose independent rect. 21 15
916 1296.91 temperature 30.0 1440 < th dose independent rect. 8 9