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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0327800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.52 (0.0186) R2 : 0.426
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.885 (0.0489) R2dC : 0.415 R2C : 0.404
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.0392) R2dN8 : 0.0223 R2N8 : 0.0113
σ : 0.352
deviance : 56.49
__
_____
C
peak time of C : 18.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.08 0.305 7.54 0.17 0.912 -0.642 -0.213 0.078 0.0656 18.1 18.4 4388 -- --
42.08 0.302 7.54 0.171 0.911 -0.67 -0.225 -- 0.0619 18.1 18.42 4411 -- --
42.18 0.302 7.54 0.174 0.909 -0.646 -- 0.0583 0.0646 18.1 18.42 4414 -- --
42.18 0.303 7.54 0.176 0.91 -0.665 -- -- 0.0659 18.1 18.5 4426 -- --
84.09 0.427 7.53 0.144 -- -0.582 -- 0.193 0.0418 -- 18.9 4862 -- --
48.23 0.326 7.5 0.557 0.894 -- -0.144 -- 0.208 18.1 -- -- -- --
48.29 0.325 7.51 0.558 0.893 -- -- -- 0.207 18.1 -- -- -- --
83.56 0.426 7.53 0.105 -- -0.69 -- -- 0.0297 -- 18.8 6293 -- --
42.65 0.304 7.55 -- 0.885 -0.768 -- -- 0.052 18 18.4 6244 -- --
89.66 0.442 7.49 0.533 -- -- -- -- 0.187 -- -- -- -- --
56.49 0.352 7.52 -- 0.885 -- -- -- 0.145 18.1 -- -- -- --
83.74 0.426 7.53 -- -- -0.752 -- -- 0.00841 -- 18.71 6287 -- --
97.14 0.46 7.5 -- -- -- -- -- 0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.68 temperature 20 270 < th dose dependent rect. 23 7
6 40.85 humidity 50 43200 < th dose dependent rect. 8 1
9 40.93 temperature 20 270 < th dose independent rect. 23 7
11 41.02 temperature 20 270 < th dose independent rect. 2 3
17 41.22 temperature 20 270 > th dose independent rect. 21 13
18 41.24 temperature 20 270 < th dose independent rect. 3 1
19 41.24 temperature 20 270 < th dose independent rect. 1 5
24 41.32 temperature 20 270 < th dose independent sin 9 NA
35 41.38 temperature 20 90 < th dose independent sin 7 NA
37 41.40 temperature 20 90 > th dose independent sin 7 NA
38 41.40 radiation 1 1440 < th dose independent rect. 13 1
40 41.40 radiation 1 1440 < th dose dependent rect. 13 1
41 41.43 temperature 20 270 > th dose independent sin 9 NA
54 41.52 temperature 20 270 < th dose dependent rect. 1 4
55 41.55 radiation 1 1440 < th dose independent rect. 10 5
56 41.55 radiation 1 1440 < th dose dependent rect. 10 5
57 41.56 temperature 20 270 < th dose dependent sin 9 NA
62 41.58 humidity 50 43200 < th dose independent rect. 7 2
64 41.61 radiation 1 1440 > th dose independent rect. 13 2
70 41.64 temperature 20 10 > th dose independent sin 6 NA
74 41.65 temperature 20 10 < th dose independent rect. 2 5
78 41.66 temperature 20 90 < th dose dependent sin 7 NA
79 41.67 humidity 50 43200 > th dose independent rect. 7 1
92 41.74 temperature 20 10 < th dose independent sin 6 NA
113 41.87 temperature 30 90 < th dose dependent rect. 17 15
120 41.90 radiation 1 1440 > th dose independent rect. 11 4
145 41.97 radiation 1 1440 < th dose independent rect. 11 1
147 41.97 radiation 1 1440 < th dose dependent rect. 11 1
178 42.05 temperature 20 270 < th dose independent rect. 18 12
183 42.08 radiation 1 4320 > th dose independent rect. 4 1
195 42.08 radiation 1 4320 > th dose dependent rect. 4 1
210 42.09 humidity 90 14400 > th dose dependent rect. 7 1
214 42.10 temperature 20 4320 < th dose dependent rect. 5 1
216 42.10 radiation 40 43200 < th dose dependent rect. 18 3
239 42.15 radiation 10 43200 < th dose dependent rect. 18 11
248 42.17 radiation 40 43200 < th dose dependent rect. 18 1
250 42.17 temperature 20 4320 < th dose dependent rect. 22 3
253 42.18 humidity 50 43200 > th dose independent rect. 22 11
254 42.18 temperature 20 270 < th dose dependent rect. 3 1
258 42.18 radiation 40 43200 < th dose dependent rect. 18 7
281 42.20 temperature 20 4320 < th dose dependent rect. 20 11
285 42.21 humidity 50 43200 > th dose independent rect. 1 8
295 42.21 temperature 30 10 < th dose dependent rect. 18 14
307 42.22 temperature 20 4320 < th dose dependent rect. 20 14
326 42.24 temperature 20 4320 < th dose dependent sin 9 NA
341 42.25 radiation 30 4320 < th dose independent rect. 6 2
350 42.25 temperature 20 4320 < th dose dependent rect. 3 7
374 42.27 temperature 20 270 > th dose independent rect. 18 21
395 42.28 temperature 20 270 < th dose independent rect. 10 20
414 42.29 wind 3 43200 > th dose independent rect. 6 1
415 42.29 wind 3 43200 < th dose independent rect. 6 1
527 42.35 wind 1 14400 > th dose independent rect. 23 3
532 42.35 radiation 30 4320 < th dose independent rect. 20 12
534 42.35 radiation 30 4320 < th dose independent rect. 18 14
542 42.35 temperature 20 270 < th dose dependent rect. 10 20
554 42.36 humidity 90 14400 > th dose independent rect. 9 1
555 42.36 humidity 90 14400 > th dose independent rect. 8 3
561 42.36 radiation 1 14400 > th dose dependent rect. 18 1
638 42.39 temperature 20 720 < th dose independent rect. 16 11
639 42.39 temperature 20 4320 < th dose dependent no NA NA
643 42.39 humidity 90 14400 > th dose dependent rect. 7 7
649 42.39 temperature 20 4320 < th dose dependent rect. 3 23
655 42.40 temperature 10 43200 < th dose dependent rect. 4 1
667 42.41 temperature 10 43200 > th dose independent rect. 4 1
669 42.41 temperature 20 4320 < th dose independent rect. 13 11
678 42.42 wind 9 43200 < th dose independent rect. 6 1
683 42.42 temperature 20 4320 < th dose independent rect. 15 9
687 42.42 humidity 80 14400 > th dose dependent rect. 10 1
719 42.43 wind 3 43200 < th dose dependent rect. 6 1
730 42.44 humidity 90 14400 < th dose independent rect. 7 4
731 42.44 temperature 20 4320 < th dose independent rect. 18 5
751 42.45 temperature 10 43200 < th dose independent rect. 4 1
753 42.45 atmosphere 1015 14400 < th dose independent rect. 13 1
756 42.45 temperature 20 90 < th dose independent rect. 2 9
767 42.46 atmosphere 1015 14400 > th dose independent rect. 12 1
776 42.46 temperature 20 4320 > th dose independent rect. 13 11
788 42.47 temperature 20 4320 < th dose independent rect. 20 1
798 42.47 temperature 20 1440 < th dose independent rect. 2 14
810 42.48 temperature 20 720 < th dose independent sin 15 NA
821 42.48 temperature 20 1440 < th dose independent rect. 3 12
822 42.48 temperature 20 1440 > th dose independent rect. 3 13
829 42.48 temperature 20 90 < th dose independent rect. 2 21
887 42.51 temperature 20 4320 < th dose independent sin 17 NA
899 42.51 temperature 20 4320 < th dose independent rect. 9 17
918 42.52 temperature 20 4320 > th dose independent rect. 17 6
927 42.52 temperature 20 720 < th dose independent rect. 12 16
929 42.52 wind 1 43200 > th dose dependent rect. 6 1
930 42.52 atmosphere 1015 14400 > th dose dependent rect. 12 1
947 42.53 temperature 20 4320 > th dose independent rect. 18 4
953 42.53 temperature 20 4320 > th dose independent rect. 9 17
963 42.54 atmosphere 1015 14400 < th dose independent rect. 19 1
990 42.55 temperature 20 4320 > th dose independent sin 17 NA