Os10g0327300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphatidate cytidylyltransferase (EC 2.7.7.41).
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Os10g0327300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphatidate cytidylyltransferase (EC 2.7.7.41).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.4 | 0.255 | 7.95 | 1.12 | 0.312 | -0.501 | -0.392 | 1.04 | 0.466 | 23.9 | 24.8 | 1164 | -- | -- |
| 30.32 | 0.256 | 7.99 | 0.884 | 0.305 | -0.357 | -0.336 | -- | 0.396 | 23.7 | 25 | 2551 | -- | -- |
| 30.01 | 0.255 | 7.95 | 1.09 | 0.314 | -0.489 | -- | 0.861 | 0.456 | 23.7 | 25 | 1158 | -- | -- |
| 30.2 | 0.256 | 7.98 | 0.899 | 0.311 | -0.412 | -- | -- | 0.402 | 23.8 | 25 | 1163 | -- | -- |
| 34.98 | 0.275 | 7.96 | 1.02 | -- | -0.367 | -- | 0.556 | 0.413 | -- | 25.27 | 3068 | -- | -- |
| 34.85 | 0.277 | 7.99 | 0.746 | 0.225 | -- | -0.398 | -- | 0.354 | 23.9 | -- | -- | -- | -- |
| 35.49 | 0.279 | 7.99 | 0.763 | 0.229 | -- | -- | -- | 0.357 | 23.4 | -- | -- | -- | -- |
| 34.7 | 0.274 | 7.96 | 0.909 | -- | -0.315 | -- | -- | 0.479 | -- | 25.23 | 8748 | -- | -- |
| 49.33 | 0.327 | 8.01 | -- | 0.281 | -0.205 | -- | -- | 0.282 | 23.6 | 25.42 | 1142 | -- | -- |
| 38.78 | 0.291 | 7.99 | 0.769 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 50.84 | 0.334 | 8.01 | -- | 0.237 | -- | -- | -- | 0.272 | 23.6 | -- | -- | -- | -- |
| 47.08 | 0.32 | 8.03 | -- | -- | 0.431 | -- | -- | 0.143 | -- | 12.24 | 47520 | -- | -- |
| 54.39 | 0.344 | 8 | -- | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.57 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 6 | 27.62 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 6 |
| 15 | 27.85 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 45 | 28.15 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 90 | 28.60 | temperature | 25.0 | 720 | > th | dose independent | sin | 14 | NA |
| 102 | 28.66 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 118 | 28.74 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 142 | 28.85 | temperature | 25.0 | 720 | < th | dose independent | sin | 14 | NA |
| 169 | 28.96 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 183 | 29.01 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 218 | 29.19 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 19 |
| 219 | 29.19 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 14 |
| 220 | 29.20 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 226 | 29.22 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 229 | 29.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 258 | 29.30 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 265 | 29.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 291 | 29.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 317 | 29.40 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 334 | 29.44 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 343 | 29.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 19 |
| 355 | 29.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 359 | 29.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 360 | 29.49 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 366 | 29.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 372 | 29.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 374 | 29.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 376 | 29.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 380 | 29.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 382 | 29.51 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 17 | NA |
| 383 | 29.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 386 | 29.51 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 388 | 29.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 400 | 29.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 11 |
| 406 | 29.52 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 17 | NA |
| 411 | 29.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 414 | 29.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 420 | 29.52 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 426 | 29.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 449 | 29.54 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 454 | 29.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 464 | 29.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 12 |
| 501 | 29.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 514 | 29.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 524 | 29.56 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 526 | 29.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 9 |
| 567 | 29.58 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 649 | 29.62 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 662 | 29.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 663 | 29.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 22 |
| 664 | 29.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 668 | 29.63 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 670 | 29.63 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 680 | 29.63 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 683 | 29.63 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 703 | 29.64 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 712 | 29.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 733 | 29.65 | temperature | 20.0 | 90 | > th | dose dependent | sin | 10 | NA |
| 744 | 29.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 764 | 29.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 779 | 29.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 788 | 29.67 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 797 | 29.67 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 808 | 29.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 19 |
| 840 | 29.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 858 | 29.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 866 | 29.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 879 | 29.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 889 | 29.69 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 896 | 29.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 899 | 29.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 953 | 29.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 955 | 29.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 965 | 29.71 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 972 | 29.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 990 | 29.72 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 12 |