Os10g0323200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0323200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.35 | 0.733 | 5.95 | 0.485 | 0.261 | -1.68 | 0.185 | 3.2 | 0.636 | 13.6 | 24.1 | 4211 | -- | -- |
| 246.38 | 0.731 | 5.98 | 0.0221 | 0.253 | -1.49 | 0.182 | -- | 0.751 | 11.8 | 19.8 | 5615 | -- | -- |
| 243.43 | 0.727 | 5.95 | 0.479 | 0.263 | -1.68 | -- | 3.16 | 0.633 | 14 | 24.12 | 4211 | -- | -- |
| 245.19 | 0.729 | 5.99 | -0.0668 | 0.305 | -1.47 | -- | -- | 0.69 | 13.7 | 19.52 | 5609 | -- | -- |
| 246.97 | 0.732 | 5.94 | 0.512 | -- | -1.76 | -- | 3.3 | 0.643 | -- | 24.1 | 4083 | -- | -- |
| 304.19 | 0.818 | 6.08 | -0.817 | 0.393 | -- | 0.243 | -- | 0.325 | 13.5 | -- | -- | -- | -- |
| 304.39 | 0.817 | 6.08 | -0.808 | 0.396 | -- | -- | -- | 0.327 | 13.8 | -- | -- | -- | -- |
| 250.25 | 0.737 | 6 | -0.109 | -- | -1.49 | -- | -- | 0.673 | -- | 20.3 | 5445 | -- | -- |
| 245.25 | 0.729 | 5.99 | -- | 0.306 | -1.51 | -- | -- | 0.702 | 13.7 | 19.04 | 5611 | -- | -- |
| 313.9 | 0.828 | 6.08 | -0.824 | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
| 321.6 | 0.839 | 6.06 | -- | 0.411 | -- | -- | -- | 0.417 | 13.8 | -- | -- | -- | -- |
| 250.34 | 0.737 | 6 | -- | -- | -1.56 | -- | -- | 0.694 | -- | 19.6 | 5457 | -- | -- |
| 331.82 | 0.85 | 6.06 | -- | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.54 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 3 | 235.99 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 17 | 237.13 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 20 | 237.39 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 21 | 237.41 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 23 | 237.50 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 30 | 237.65 | temperature | 25.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 34 | 237.87 | temperature | 25.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 35 | 237.87 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 97 | 239.72 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 4 |
| 98 | 239.73 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 103 | 239.79 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 106 | 239.84 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 2 | 2 |
| 138 | 240.29 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 204 | 241.16 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 215 | 241.28 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 227 | 241.34 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 236 | 241.44 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 261 | 241.65 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 4 |
| 262 | 241.67 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 8 |
| 263 | 241.68 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 269 | 241.71 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 277 | 241.76 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 300 | 241.86 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 322 | 241.96 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 323 | 241.97 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 570 | 242.99 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 578 | 243.02 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 585 | 243.05 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 649 | 243.37 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 687 | 243.52 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 711 | 243.60 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 717 | 243.62 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 752 | 243.73 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 780 | 243.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 783 | 243.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 822 | 243.94 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 825 | 243.95 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 828 | 243.95 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 834 | 243.97 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 836 | 243.97 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 845 | 243.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 851 | 244.00 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 859 | 244.01 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 862 | 244.01 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 867 | 244.03 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 883 | 244.04 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 931 | 244.13 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 941 | 244.15 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 945 | 244.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 974 | 244.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 7 |