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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0318200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.028) R2 : 0.59
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.54 (0.1) R2dE : 0.627 R2E : 0.573
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.22 (0.0608) R2dN8 : 0.0165 R2N8 : -0.0372
σ : 0.521
deviance : 125.28
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.43
memory length : 11635
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.54 0.503 3.14 -0.679 0.0284 1.13 -1.12 -2.75 0.106 22 19.46 5953 -- --
116.57 0.503 3.25 -0.803 0.0651 2.18 -1.23 -- 0.0474 22.6 18.78 7372 -- --
119.44 0.509 3.14 -0.656 0.032 1.12 -- -2.74 0.098 22.4 19.4 5936 -- --
122.36 0.515 3.25 -0.734 0.0601 2.2 -- -- 0.0397 22.7 18.73 7392 -- --
119.5 0.509 3.14 -0.634 -- 1.13 -- -2.76 0.0987 -- 19.4 5935 -- --
176.31 0.622 3.36 -2.17 0.0333 -- -1.27 -- -0.449 21.9 -- -- -- --
182.58 0.633 3.36 -2.12 0.0419 -- -- -- -0.446 20.9 -- -- -- --
122.5 0.515 3.25 -0.692 -- 2.25 -- -- 0.0664 -- 18.73 7392 -- --
125.14 0.521 3.21 -- 0.0478 2.54 -- -- 0.22 22.9 18.46 11593 -- --
182.68 0.632 3.36 -2.12 -- -- -- -- -0.446 -- -- -- -- --
301.46 0.812 3.31 -- 0.062 -- -- -- -0.21 18.1 -- -- -- --
125.28 0.521 3.21 -- -- 2.54 -- -- 0.22 -- 18.43 11635 -- --
301.66 0.811 3.31 -- -- -- -- -- -0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.75 radiation 10.0 4320 < th dose independent rect. 18 11
3 110.90 radiation 30.0 4320 < th dose independent rect. 16 12
6 111.08 humidity 50.0 43200 < th dose independent rect. 8 2
7 111.12 radiation 40.0 4320 < th dose independent rect. 15 1
17 111.54 radiation 40.0 4320 < th dose independent rect. 15 7
25 111.84 radiation 10.0 4320 < th dose independent rect. 24 6
26 111.86 radiation 10.0 4320 < th dose independent rect. 20 10
29 111.97 humidity 50.0 43200 > th dose independent rect. 8 1
30 111.97 humidity 50.0 43200 > th dose independent rect. 7 3
36 112.10 radiation 10.0 4320 < th dose independent rect. 5 1
40 112.24 radiation 10.0 4320 < th dose independent rect. 3 3
48 112.66 humidity 80.0 43200 < th dose independent rect. 6 2
57 113.13 humidity 80.0 43200 > th dose independent rect. 6 2
68 113.44 radiation 1.0 14400 > th dose independent rect. 8 3
77 113.55 radiation 1.0 14400 < th dose independent rect. 8 3
84 113.60 humidity 50.0 43200 > th dose independent rect. 11 2
88 113.63 radiation 10.0 4320 < th dose independent rect. 18 7
105 113.79 radiation 10.0 4320 < th dose independent rect. 18 1
122 113.95 humidity 50.0 43200 < th dose independent rect. 13 1
127 113.98 radiation 1.0 14400 < th dose dependent rect. 6 4
136 114.04 temperature 20.0 43200 < th dose dependent rect. 3 1
159 114.19 radiation 1.0 14400 < th dose independent rect. 6 3
162 114.20 radiation 1.0 14400 > th dose independent rect. 6 3
179 114.27 radiation 1.0 14400 < th dose dependent rect. 8 3
200 114.38 radiation 1.0 14400 < th dose dependent rect. 22 13
205 114.39 radiation 1.0 14400 < th dose dependent rect. 2 9
241 114.51 humidity 50.0 43200 < th dose independent rect. 21 13
260 114.56 humidity 50.0 43200 > th dose independent sin 1 NA
307 114.66 temperature 15.0 43200 < th dose independent rect. 24 1
311 114.67 temperature 15.0 43200 > th dose independent rect. 24 1
343 114.79 temperature 20.0 43200 < th dose independent rect. 7 1
354 114.82 temperature 20.0 43200 > th dose independent rect. 7 1
370 114.83 radiation 1.0 14400 < th dose independent rect. 22 13
379 114.84 radiation 1.0 14400 < th dose independent rect. 3 8
386 114.85 humidity 50.0 43200 < th dose independent sin 1 NA
420 114.90 humidity 70.0 43200 > th dose independent rect. 19 2
428 114.91 humidity 60.0 43200 < th dose dependent rect. 7 2
441 114.94 humidity 50.0 43200 > th dose independent rect. 21 13
466 114.98 temperature 20.0 43200 < th dose independent rect. 6 4
473 114.98 humidity 80.0 43200 < th dose dependent rect. 7 2
499 115.02 humidity 50.0 43200 < th dose independent rect. 18 16
565 115.07 temperature 20.0 43200 > th dose independent rect. 6 4
608 115.12 humidity 50.0 43200 > th dose independent rect. 18 16
633 115.15 humidity 70.0 43200 < th dose independent rect. 19 2
648 115.18 atmosphere 1010.0 43200 < th dose independent rect. 20 1
668 115.21 temperature 20.0 43200 < th dose independent rect. 5 7
696 115.24 radiation 20.0 43200 < th dose independent rect. 24 7
698 115.24 humidity 60.0 43200 < th dose dependent rect. 11 2
699 115.24 humidity 60.0 43200 < th dose dependent rect. 9 4
702 115.25 atmosphere 1010.0 43200 > th dose independent rect. 20 1
714 115.26 radiation 20.0 43200 < th dose independent rect. 21 10
724 115.27 humidity 50.0 43200 > th dose independent rect. 1 9
733 115.28 radiation 20.0 43200 < th dose independent rect. 3 4
736 115.28 humidity 50.0 43200 > th dose independent rect. 23 11
740 115.29 radiation 20.0 43200 < th dose independent rect. 6 1
758 115.31 precipitation 0.1 14400 > th dose independent rect. 6 1
761 115.31 atmosphere 1010.0 43200 < th dose independent rect. 20 6
762 115.31 precipitation 0.1 14400 > th dose dependent rect. 6 1
767 115.32 atmosphere 1010.0 43200 < th dose independent rect. 20 8
776 115.34 atmosphere 1010.0 43200 > th dose independent rect. 3 1
819 115.37 atmosphere 1010.0 43200 < th dose independent rect. 3 1
824 115.37 atmosphere 1010.0 43200 > th dose independent rect. 20 8
835 115.38 temperature 20.0 43200 < th dose dependent sin 8 NA
840 115.38 radiation 10.0 14400 < th dose dependent rect. 20 9
841 115.39 atmosphere 1010.0 43200 > th dose independent rect. 20 6
850 115.40 atmosphere 1010.0 43200 > th dose independent rect. 1 3
908 115.44 atmosphere 1010.0 43200 > th dose independent rect. 24 1
919 115.44 radiation 10.0 43200 > th dose dependent rect. 5 1
938 115.45 atmosphere 1010.0 43200 < th dose independent rect. 24 6
954 115.46 atmosphere 1010.0 43200 < th dose independent rect. 1 3
963 115.46 humidity 70.0 43200 < th dose independent rect. 20 7
995 115.48 atmosphere 1010.0 43200 < th dose independent rect. 1 1