FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0315400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UBA-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.69 (0.043) R2 : 0.526
β1 : 1.05 (0.158) R2dD : 0.0478 R2D : -0.0214
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.82 (0.0919) R2dN8 : 0.547 R2N8 : 0.478
σ : 0.808
deviance : 299.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.71 0.772 4.68 1.05 0.364 0.584 0.647 -1.87 -1.68 11.4 92 291 -- --
279.79 0.779 4.65 1.02 0.371 0.517 0.81 -- -1.66 11.5 92 314 -- --
271.16 0.767 4.68 1.08 0.382 0.615 -- -1.93 -1.68 12.1 92.03 272 -- --
281.92 0.782 4.65 0.997 0.392 0.571 -- -- -1.69 12.7 92.01 314 -- --
279.47 0.779 4.69 1.08 -- 0.569 -- -1.96 -1.68 -- 92.27 309 -- --
288.2 0.796 4.68 1.02 0.38 -- 0.784 -- -1.82 9.97 -- -- -- --
290.56 0.798 4.68 1.05 0.379 -- -- -- -1.82 9.73 -- -- -- --
284.97 0.786 4.67 0.946 -- 0.818 -- -- -1.7 -- 91.24 875 -- --
307.1 0.816 4.67 -- 0.405 0.681 -- -- -1.76 13.2 92 313 -- --
299.1 0.808 4.69 1.05 -- -- -- -- -1.82 -- -- -- -- --
319.77 0.836 4.71 -- 0.377 -- -- -- -1.94 9.52 -- -- -- --
308.06 0.817 4.68 -- -- 0.988 -- -- -1.78 -- 91.15 903 -- --
328.13 0.846 4.72 -- -- -- -- -- -1.94 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.43 humidity 90.0 270 < th dose independent rect. 15 20
2 265.53 atmosphere 1005.0 720 > th dose independent rect. 24 2
3 265.60 humidity 90.0 10 < th dose dependent rect. 21 15
5 265.80 humidity 90.0 90 < th dose independent rect. 23 13
6 265.80 humidity 90.0 10 < th dose dependent rect. 19 17
8 265.97 atmosphere 1005.0 90 > th dose independent rect. 23 13
9 266.04 humidity 90.0 10 < th dose dependent rect. 23 13
12 266.18 atmosphere 995.0 30 > th dose dependent rect. 8 4
13 266.21 humidity 90.0 90 < th dose dependent rect. 19 17
23 266.58 atmosphere 1005.0 10 > th dose independent rect. 24 12
29 266.82 atmosphere 995.0 270 > th dose dependent rect. 8 1
33 266.86 humidity 90.0 90 < th dose independent rect. 21 15
34 266.88 humidity 90.0 10 < th dose dependent rect. 1 11
46 267.30 temperature 30.0 90 < th dose independent rect. 8 4
50 267.45 atmosphere 1005.0 10 > th dose independent rect. 16 20
53 267.50 atmosphere 1005.0 10 > th dose independent rect. 18 18
57 267.61 humidity 90.0 90 < th dose independent rect. 1 11
60 267.62 humidity 90.0 720 > th dose dependent rect. 17 7
64 267.78 atmosphere 1005.0 270 > th dose independent rect. 8 1
65 267.78 atmosphere 995.0 90 > th dose dependent rect. 6 6
68 267.85 humidity 90.0 270 < th dose independent sin 8 NA
72 268.00 humidity 90.0 720 > th dose independent rect. 18 6
82 268.13 humidity 90.0 720 > th dose dependent rect. 21 2
86 268.17 humidity 90.0 10 < th dose dependent rect. 6 6
93 268.23 humidity 90.0 10 < th dose dependent rect. 8 4
107 268.46 humidity 80.0 30 < th dose independent rect. 8 4
114 268.53 humidity 90.0 720 > th dose independent rect. 21 2
115 268.55 atmosphere 1005.0 10 > th dose independent rect. 8 4
124 268.64 humidity 90.0 90 < th dose dependent sin 9 NA
162 269.12 humidity 90.0 270 < th dose independent rect. 8 1
167 269.13 temperature 10.0 1440 > th dose independent rect. 9 4
170 269.13 atmosphere 995.0 1440 > th dose independent rect. 9 4
171 269.13 temperature 10.0 1440 > th dose independent rect. 13 20
178 269.15 temperature 30.0 270 < th dose independent rect. 8 1
189 269.28 atmosphere 1005.0 10 > th dose independent rect. 14 22
201 269.45 atmosphere 995.0 90 > th dose dependent rect. 2 10
202 269.47 temperature 10.0 30 > th dose independent rect. 8 4
205 269.47 atmosphere 1015.0 30 < th dose independent rect. 8 4
206 269.47 precipitation 0.1 30 < th dose independent rect. 8 4
208 269.47 temperature 10.0 30 > th dose independent rect. 12 20
210 269.47 precipitation 0.1 30 < th dose dependent rect. 8 4
218 269.55 radiation 1.0 30 > th dose independent rect. 8 4
219 269.57 humidity 90.0 270 > th dose dependent rect. 21 12
222 269.59 humidity 50.0 30 > th dose dependent rect. 12 20
227 269.62 humidity 90.0 720 > th dose independent rect. 5 20
230 269.65 wind 1.0 30 > th dose independent rect. 8 4
236 269.68 atmosphere 1005.0 90 > th dose independent rect. 6 6
237 269.69 radiation 10.0 30 > th dose independent rect. 6 6
249 269.69 humidity 90.0 720 > th dose independent rect. 7 18
253 269.70 humidity 90.0 270 > th dose dependent rect. 18 14
275 269.79 humidity 90.0 270 > th dose dependent rect. 4 23
281 269.83 humidity 90.0 720 > th dose dependent rect. 11 13
284 269.83 humidity 90.0 720 > th dose dependent rect. 8 16
288 269.84 humidity 90.0 270 > th dose dependent rect. 10 22
299 269.91 precipitation 0.1 30 < th dose independent rect. 12 20
301 269.91 precipitation 0.1 30 < th dose dependent rect. 12 20
323 269.98 wind 9.0 30 < th dose independent rect. 8 4
353 270.07 humidity 80.0 10 < th dose independent rect. 1 11
356 270.08 humidity 90.0 270 > th dose dependent rect. 21 19
386 270.18 humidity 50.0 10 > th dose dependent rect. 12 22
396 270.22 humidity 90.0 270 > th dose independent rect. 21 11
397 270.22 atmosphere 995.0 30 > th dose independent rect. 12 20
433 270.29 atmosphere 1010.0 270 < th dose dependent rect. 3 4
438 270.29 humidity 90.0 270 > th dose dependent rect. 21 22
452 270.32 precipitation 0.1 90 > th dose independent rect. 23 4
454 270.32 precipitation 0.1 90 > th dose dependent rect. 23 4
479 270.42 wind 9.0 270 < th dose independent rect. 8 1
480 270.42 temperature 10.0 270 > th dose independent rect. 8 1
482 270.42 humidity 50.0 270 > th dose independent rect. 8 1
484 270.42 atmosphere 1015.0 270 < th dose independent rect. 8 1
485 270.42 precipitation 0.1 270 < th dose independent rect. 8 1
486 270.42 temperature 10.0 270 > th dose independent rect. 9 23
487 270.42 precipitation 0.1 270 < th dose dependent rect. 8 1
502 270.46 wind 9.0 30 < th dose independent rect. 12 20
509 270.48 atmosphere 1005.0 90 < th dose independent rect. 24 9
513 270.50 atmosphere 1005.0 10 < th dose independent rect. 24 10
514 270.50 humidity 90.0 270 > th dose dependent no NA NA
522 270.52 humidity 90.0 10 < th dose dependent rect. 16 20
543 270.57 humidity 60.0 10 > th dose independent rect. 12 20
544 270.57 humidity 90.0 270 > th dose dependent sin 10 NA
567 270.63 humidity 50.0 90 > th dose dependent sin 9 NA
568 270.63 humidity 90.0 10 < th dose dependent sin 7 NA
570 270.64 humidity 90.0 270 < th dose independent rect. 6 5
574 270.65 atmosphere 1010.0 270 < th dose dependent rect. 2 6
588 270.71 radiation 1.0 270 > th dose independent rect. 8 1
606 270.77 atmosphere 1015.0 30 < th dose independent rect. 12 20
607 270.77 wind 9.0 270 < th dose dependent rect. 8 1
621 270.83 humidity 50.0 90 > th dose independent rect. 12 20
624 270.84 humidity 70.0 270 > th dose dependent rect. 21 10
631 270.86 atmosphere 1005.0 10 < th dose independent sin 6 NA
681 271.03 humidity 90.0 720 > th dose independent rect. 10 15
682 271.03 wind 1.0 30 > th dose independent rect. 12 20
697 271.06 wind 1.0 30 > th dose dependent rect. 4 4
702 271.09 humidity 90.0 720 < th dose independent rect. 7 18
709 271.11 humidity 50.0 90 > th dose independent rect. 8 4
732 271.20 atmosphere 1000.0 10 > th dose dependent rect. 24 12
739 271.22 atmosphere 1005.0 10 < th dose independent rect. 24 15
792 271.39 atmosphere 1015.0 270 < th dose dependent rect. 1 14
793 271.41 atmosphere 1005.0 90 < th dose independent rect. 24 14
821 271.47 temperature 30.0 270 < th dose independent rect. 6 6
822 271.47 atmosphere 1015.0 10 < th dose dependent rect. 12 22
824 271.48 humidity 90.0 270 < th dose independent rect. 3 6
845 271.55 humidity 90.0 270 > th dose independent rect. 19 14
905 271.74 humidity 90.0 720 > th dose dependent sin 18 NA
943 271.81 wind 1.0 270 > th dose independent rect. 8 1
972 271.88 temperature 30.0 270 < th dose dependent rect. 8 1
983 271.91 humidity 90.0 720 > th dose independent sin 16 NA