Os10g0214400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding signal recognition particle SRP54, G-domain containing protein.
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Os10g0214400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP-binding signal recognition particle SRP54, G-domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.93 | 0.23 | 8.03 | -0.704 | 0.362 | -0.0516 | -0.166 | -0.996 | 0.0951 | 5.04 | 20 | 1603 | -- | -- |
| 25.5 | 0.235 | 8 | -0.59 | 0.345 | 0.128 | -0.204 | -- | 0.108 | 5.16 | 19.76 | 2930 | -- | -- |
| 24 | 0.228 | 8.03 | -0.705 | 0.361 | -0.0493 | -- | -0.998 | 0.0953 | 5.05 | 20.02 | 1593 | -- | -- |
| 25.32 | 0.234 | 8 | -0.608 | 0.329 | 0.209 | -- | -- | 0.107 | 4.9 | 18.5 | 2768 | -- | -- |
| 30.83 | 0.259 | 8.03 | -0.7 | -- | -0.0488 | -- | -1.03 | 0.102 | -- | 20.04 | 1593 | -- | -- |
| 25.85 | 0.238 | 7.99 | -0.505 | 0.366 | -- | -0.181 | -- | 0.148 | 5.1 | -- | -- | -- | -- |
| 25.94 | 0.238 | 7.99 | -0.505 | 0.365 | -- | -- | -- | 0.149 | 5.11 | -- | -- | -- | -- |
| 31.78 | 0.263 | 8.02 | -0.618 | -- | 0.277 | -- | -- | 0.0958 | -- | 18.38 | 2748 | -- | -- |
| 28.97 | 0.251 | 7.96 | -- | 0.423 | -0.311 | -- | -- | 0.22 | 4.86 | 21.66 | 28394 | -- | -- |
| 32.92 | 0.268 | 8 | -0.492 | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
| 32.66 | 0.267 | 7.98 | -- | 0.356 | -- | -- | -- | 0.205 | 5.16 | -- | -- | -- | -- |
| 34.61 | 0.274 | 7.96 | -- | -- | -0.319 | -- | -- | 0.335 | -- | 24.39 | 47520 | -- | -- |
| 39.31 | 0.293 | 7.99 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.14 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 2 | 23.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 39 | 23.42 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 46 | 23.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 47 | 23.44 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 60 | 23.46 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 82 | 23.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 95 | 23.54 | temperature | 20.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 96 | 23.54 | temperature | 20.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 158 | 23.63 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 220 | 23.72 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 241 | 23.75 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 242 | 23.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 255 | 23.77 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 299 | 23.83 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 321 | 23.85 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 335 | 23.88 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 346 | 23.90 | radiation | 40.0 | 90 | < th | dose independent | rect. | 9 | 13 |
| 354 | 23.91 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 378 | 23.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 398 | 23.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 410 | 23.95 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 411 | 23.95 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 412 | 23.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 413 | 23.95 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 421 | 23.97 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 460 | 23.99 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 461 | 23.99 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 496 | 24.01 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 535 | 24.03 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 539 | 24.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 540 | 24.04 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 541 | 24.04 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 563 | 24.04 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 576 | 24.05 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 581 | 24.06 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 592 | 24.06 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 595 | 24.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 599 | 24.07 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 600 | 24.07 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 615 | 24.07 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 617 | 24.08 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 641 | 24.09 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 663 | 24.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 672 | 24.11 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 702 | 24.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 709 | 24.12 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 7 | 15 |
| 721 | 24.13 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 733 | 24.13 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 735 | 24.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 743 | 24.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 13 |
| 746 | 24.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 747 | 24.14 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 765 | 24.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 11 |
| 770 | 24.15 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 772 | 24.15 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 785 | 24.15 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 786 | 24.15 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 7 | 15 |
| 787 | 24.15 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 789 | 24.15 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 792 | 24.15 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 805 | 24.16 | wind | 1.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 806 | 24.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 807 | 24.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 821 | 24.16 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 822 | 24.16 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 839 | 24.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 840 | 24.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 876 | 24.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 879 | 24.18 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 881 | 24.18 | wind | 9.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 893 | 24.18 | radiation | 40.0 | 30 | < th | dose independent | rect. | 16 | 21 |
| 894 | 24.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 899 | 24.18 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 904 | 24.19 | humidity | 90.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 905 | 24.19 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 925 | 24.19 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 940 | 24.20 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 941 | 24.20 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 949 | 24.20 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 978 | 24.20 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 990 | 24.21 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 991 | 24.21 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 997 | 24.21 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 9 |