Os10g0213100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gamma-aminobutyrate transaminase subunit isozyme 3 (EC 2.6.1.19).
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Os10g0213100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gamma-aminobutyrate transaminase subunit isozyme 3 (EC 2.6.1.19).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.25 | 0.552 | 3.64 | -0.0761 | 0.172 | -0.881 | -0.049 | -0.637 | 0.321 | 10.8 | 20.9 | 5757 | -- | -- |
| 138.7 | 0.549 | 3.61 | 0.0386 | 0.174 | -0.772 | -0.0343 | -- | 0.351 | 10.8 | 21.1 | 5755 | -- | -- |
| 138.26 | 0.548 | 3.64 | -0.0771 | 0.172 | -0.881 | -- | -0.634 | 0.321 | 10.8 | 20.91 | 5759 | -- | -- |
| 138.71 | 0.549 | 3.61 | 0.038 | 0.174 | -0.773 | -- | -- | 0.352 | 10.8 | 21.1 | 5758 | -- | -- |
| 140.08 | 0.551 | 3.64 | -0.0716 | -- | -0.891 | -- | -0.63 | 0.323 | -- | 20.9 | 5720 | -- | -- |
| 151.2 | 0.576 | 3.67 | -0.49 | 0.185 | -- | -0.0221 | -- | 0.093 | 11.2 | -- | -- | -- | -- |
| 151.2 | 0.576 | 3.67 | -0.491 | 0.186 | -- | -- | -- | 0.0929 | 11.1 | -- | -- | -- | -- |
| 140.32 | 0.552 | 3.62 | 0.0133 | -- | -0.739 | -- | -- | 0.366 | -- | 21 | 8376 | -- | -- |
| 138.73 | 0.549 | 3.61 | -- | 0.171 | -0.758 | -- | -- | 0.342 | 10.8 | 21.1 | 5756 | -- | -- |
| 153.35 | 0.579 | 3.68 | -0.495 | -- | -- | -- | -- | 0.0913 | -- | -- | -- | -- | -- |
| 157.55 | 0.587 | 3.66 | -- | 0.19 | -- | -- | -- | 0.148 | 11.3 | -- | -- | -- | -- |
| 140.34 | 0.552 | 3.62 | -- | -- | -0.738 | -- | -- | 0.35 | -- | 21 | 8363 | -- | -- |
| 159.82 | 0.59 | 3.66 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.19 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 3 | 136.19 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 4 | 136.28 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 13 | 136.45 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 14 | 136.49 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 21 | 136.66 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 23 | 136.71 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 29 | 136.75 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 31 | 136.77 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 34 | 136.78 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 69 | 136.91 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 100 | 137.10 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 102 | 137.11 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 11 |
| 107 | 137.13 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 137 | 137.31 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 171 | 137.34 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 186 | 137.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 187 | 137.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 205 | 137.49 | wind | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 208 | 137.49 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 227 | 137.53 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 238 | 137.58 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 17 | 17 |
| 242 | 137.60 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 249 | 137.63 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 250 | 137.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 253 | 137.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 255 | 137.65 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 260 | 137.67 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 267 | 137.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 276 | 137.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 295 | 137.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 325 | 137.77 | temperature | 20.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 333 | 137.79 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 358 | 137.84 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 360 | 137.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 362 | 137.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 367 | 137.85 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 369 | 137.86 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 390 | 137.90 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 393 | 137.91 | temperature | 20.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 494 | 138.02 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 517 | 138.06 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 528 | 138.08 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 534 | 138.11 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 560 | 138.16 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 577 | 138.19 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 598 | 138.22 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 620 | 138.23 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 22 |
| 728 | 138.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 818 | 138.42 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 829 | 138.43 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 906 | 138.49 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |