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Os10g0210500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.25 (0.0853) R2 : 0.649
β1 : -7.02 (0.379) R2dD : 0.501 R2D : -0.535
β2 : 2.02 (0.202) R2dC : 0.0769 R2C : -0.00732
β3 : 6.13 (0.374) R2dE : 0.24 R2E : 6e-04
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 38.6 (1.6) R2dD*E : 0.781 R2D*E : 0.141
γ1 : -0.871 (0.17) R2dN8 : 0.0282 R2N8 : -0.066
σ : 1.46
deviance : 980.9
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C
peak time of C : 4.66
E
wheather : radiation
threshold : 1.926
memory length : 4317
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
984.59 1.47 7.32 -7.57 2 6.23 -1.28 38.1 -0.95 4.72 1.501 4318 17.9 11.3
2087.82 2.13 8.03 -6.67 2.34 6.42 -1.41 -- -1.57 4.66 4.881 4315 17.8 11.9
980.9 1.46 7.25 -7.02 2.02 6.13 -- 38.6 -0.871 4.66 1.926 4317 17.9 11.3
1659.23 1.9 7.97 -3.63 1.89 6.31 -- -- -0.991 5.62 5.291 4309 17 13.4
1189.06 1.61 7.25 -6.96 -- 5.97 -- 38.6 -0.799 -- 1.924 4320 17.9 11.3
2603.89 2.39 7.96 -0.29 1.54 -- -2.21 -- -0.914 5.17 -- -- -- --
2615.45 2.39 7.95 -0.287 1.53 -- -- -- -0.903 5.45 -- -- -- --
1688.56 1.91 7.95 -1.75 -- 6.32 -- -- -0.156 -- 3.867 4322 17.2 13.3
1497.65 1.8 7.65 -- 1.9 6.38 -- -- 0.383 5.44 3.205 4320 17.2 13.7
2738 2.45 7.98 -0.236 -- -- -- -- -0.865 -- -- -- -- --
2617.62 2.39 7.95 -- 1.53 -- -- -- -0.871 5.45 -- -- -- --
1392.57 1.74 7.62 -- -- 6.34 -- -- 0.316 -- 2.341 19268 16.9 13.4
2739.46 2.44 7.97 -- -- -- -- -- -0.839 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 967.86 temperature 25 14400 > th dose independent rect. 18 15
3 969.85 temperature 25 14400 < th dose independent rect. 18 15
6 971.82 temperature 25 14400 > th dose independent rect. 17 11
10 972.07 temperature 25 14400 > th dose dependent rect. 15 12
15 972.50 temperature 25 14400 > th dose independent rect. 18 9
19 972.65 temperature 25 14400 > th dose dependent sin 14 NA
49 975.81 temperature 25 14400 > th dose dependent rect. 18 1
51 975.90 radiation 1 14400 < th dose independent rect. 18 11
57 976.37 temperature 25 14400 > th dose independent sin 10 NA
60 976.47 temperature 25 14400 > th dose dependent rect. 16 21
64 976.63 temperature 25 14400 < th dose independent sin 10 NA
76 977.35 humidity 90 43200 > th dose independent rect. 9 2
101 979.00 radiation 1 14400 > th dose independent rect. 18 11
107 979.48 radiation 1 14400 > th dose independent rect. 18 1
187 983.30 radiation 1 14400 < th dose independent rect. 18 2
192 983.75 temperature 25 14400 > th dose dependent rect. 8 23
193 983.85 radiation 1 14400 < th dose independent rect. 18 6
200 983.99 temperature 25 14400 > th dose dependent no NA NA
213 984.21 temperature 25 14400 > th dose dependent rect. 6 23
273 985.51 temperature 25 14400 > th dose dependent rect. 20 23
352 989.03 temperature 25 14400 < th dose independent rect. 23 1
370 989.97 temperature 25 14400 > th dose dependent sin 8 NA
393 991.72 temperature 25 14400 > th dose independent rect. 4 5
447 995.00 temperature 25 14400 < th dose independent rect. 2 7
456 995.62 temperature 25 14400 < th dose independent rect. 4 5
458 995.77 temperature 25 14400 < th dose independent rect. 1 9
471 996.87 temperature 25 14400 > th dose independent rect. 5 3
488 997.76 temperature 25 14400 < th dose independent rect. 5 3
492 998.06 humidity 80 43200 > th dose dependent rect. 10 1
497 998.34 temperature 25 14400 > th dose independent rect. 23 1
516 999.44 temperature 25 14400 > th dose independent rect. 1 9
540 1000.67 temperature 25 14400 > th dose dependent rect. 9 3
547 1001.07 temperature 25 14400 > th dose dependent rect. 8 5
620 1006.15 temperature 20 14400 > th dose dependent rect. 22 2
644 1007.73 humidity 90 43200 < th dose independent rect. 9 2
667 1009.38 humidity 80 43200 > th dose independent rect. 11 2
676 1010.04 temperature 25 14400 > th dose independent rect. 18 3
725 1014.13 temperature 25 14400 > th dose independent rect. 20 1
732 1014.94 temperature 25 43200 < th dose dependent rect. 17 1
777 1018.30 temperature 30 14400 < th dose independent rect. 12 4
786 1019.50 temperature 20 14400 > th dose dependent rect. 20 11
826 1022.35 temperature 30 14400 > th dose independent rect. 12 4
840 1023.52 temperature 25 14400 < th dose independent rect. 20 1
857 1024.58 temperature 30 14400 > th dose independent rect. 13 2
868 1025.69 temperature 30 14400 < th dose independent rect. 12 13
869 1025.71 temperature 30 14400 < th dose independent rect. 12 15
870 1025.73 temperature 30 14400 < th dose independent rect. 12 11
873 1025.75 temperature 30 14400 < th dose independent rect. 12 9
893 1026.42 temperature 25 43200 < th dose independent rect. 17 1
925 1028.35 temperature 20 14400 > th dose dependent rect. 6 1
936 1029.01 humidity 90 43200 < th dose independent rect. 17 2
976 1029.86 temperature 30 14400 > th dose independent rect. 12 7