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Os10g0207400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.9 (0.0366) R2 : 0.816
β1 : 0.792 (0.133) R2dD : 0.0127 R2D : -0.00353
β2 : 2.19 (0.121) R2dC : 0.238 R2C : 0.52
β3 : 1.79 (0.101) R2dE : 0.246 R2E : 0.531
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.823 (0.0778) R2dN8 : 0.0557 R2N8 : 0.022
σ : 0.681
deviance : 214.05
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C
peak time of C : 20.5
E
wheather : radiation
threshold : 21.86
memory length : 21
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.78
open length of G : 23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.74 0.659 9.87 0.845 1.91 1.91 1.2 -2.41 0.815 20.6 17.58 15 5.88 22.3
211.49 0.677 9.85 0.846 2.22 1.7 -0.782 -- 0.856 21 23.1 16 5.87 22.4
197.9 0.655 9.88 0.78 1.95 1.88 -- -1.77 0.812 20.6 17.38 15 5.84 22.3
214.05 0.681 9.9 0.792 2.19 1.79 -- -- 0.823 20.5 21.86 21 5.78 23
276.55 0.775 9.82 0.86 -- 3.01 -- -1.38 0.846 -- 13.23 15 5.92 22
283.71 0.79 9.95 0.56 3.71 -- -1.35 -- 0.697 21.8 -- -- -- --
290.7 0.798 9.95 0.613 3.72 -- -- -- 0.7 21.8 -- -- -- --
290.75 0.794 9.82 0.798 -- 3.01 -- -- 0.822 -- 12.92 16 5.93 22
227.34 0.702 9.91 -- 2.19 1.84 -- -- 0.721 20.5 20.69 23 5.77 23
1117.57 1.56 9.85 0.651 -- -- -- -- 0.698 -- -- -- -- --
300.61 0.811 9.97 -- 3.72 -- -- -- 0.632 21.8 -- -- -- --
305.51 0.814 9.85 -- -- 2.98 -- -- 0.692 -- 11.9 15 5.95 22
1128.76 1.57 9.87 -- -- -- -- -- 0.626 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.70 radiation 20.0 10 < th dose dependent rect. 6 22
8 222.47 radiation 20.0 10 < th dose dependent rect. 21 23
11 225.13 radiation 20.0 10 < th dose dependent rect. 13 23
12 225.25 radiation 20.0 10 < th dose dependent no NA NA
14 225.32 humidity 50.0 10 > th dose dependent rect. 6 14
16 225.45 radiation 20.0 10 < th dose dependent rect. 11 23
17 225.50 radiation 20.0 10 < th dose dependent rect. 15 23
18 225.88 radiation 10.0 10 < th dose independent rect. 6 22
23 228.10 radiation 10.0 10 > th dose independent rect. 9 23
32 229.17 radiation 20.0 10 < th dose dependent rect. 9 23
33 229.18 radiation 1.0 10 > th dose independent rect. 9 21
36 230.09 radiation 1.0 10 > th dose independent rect. 7 23
37 230.20 radiation 20.0 10 < th dose dependent rect. 6 14
61 232.42 humidity 80.0 10 > th dose independent rect. 6 14
62 232.44 radiation 10.0 10 > th dose independent sin 22 NA
65 232.62 radiation 20.0 10 < th dose dependent rect. 23 23
73 232.96 radiation 20.0 10 < th dose dependent rect. 17 23
86 233.82 humidity 80.0 10 > th dose independent rect. 6 12
88 233.98 radiation 20.0 10 < th dose dependent rect. 1 23
105 234.90 humidity 80.0 1440 < th dose dependent sin 7 NA
110 235.03 humidity 80.0 1440 < th dose dependent rect. 24 13
120 235.35 humidity 60.0 14400 > th dose independent rect. 21 10
123 235.39 radiation 10.0 10 > th dose independent rect. 7 11
140 235.60 radiation 10.0 10 > th dose independent no NA NA
224 235.75 radiation 10.0 10 > th dose independent rect. 9 9
252 235.80 radiation 10.0 10 > th dose independent rect. 11 23
253 235.81 radiation 10.0 10 < th dose dependent rect. 6 8
269 236.08 radiation 10.0 30 < th dose dependent rect. 6 11
271 236.11 humidity 80.0 1440 < th dose independent rect. 6 8
276 236.20 humidity 70.0 1440 > th dose independent rect. 18 18
280 236.23 radiation 10.0 10 > th dose independent rect. 17 23
340 236.85 humidity 80.0 1440 > th dose independent rect. 6 8
368 237.13 radiation 10.0 10 < th dose independent rect. 6 14
380 237.37 humidity 80.0 10 > th dose independent rect. 6 10
382 237.40 wind 1.0 270 < th dose independent rect. 4 1
405 237.85 humidity 70.0 1440 < th dose independent rect. 18 18
443 238.33 wind 1.0 270 < th dose dependent rect. 4 1
465 238.65 humidity 70.0 1440 > th dose independent sin 9 NA
468 238.72 precipitation 0.1 10 < th dose independent rect. 20 10
469 238.72 precipitation 0.1 10 < th dose dependent rect. 20 10
508 239.34 humidity 90.0 720 < th dose independent rect. 18 3
524 239.57 humidity 70.0 1440 > th dose independent rect. 9 3
544 239.77 radiation 20.0 10 < th dose dependent rect. 3 23
555 239.94 humidity 70.0 1440 < th dose independent sin 9 NA
570 240.14 humidity 50.0 1440 > th dose dependent rect. 9 5
591 240.33 humidity 80.0 1440 < th dose independent sin 4 NA
651 240.81 radiation 20.0 10 < th dose independent rect. 21 23
742 240.92 humidity 90.0 720 < th dose dependent rect. 18 3
759 241.05 radiation 20.0 10 < th dose dependent sin 2 NA
761 241.06 humidity 60.0 10 > th dose dependent rect. 6 22
764 241.12 wind 1.0 90 < th dose dependent rect. 4 12
781 241.23 humidity 80.0 1440 > th dose independent sin 3 NA
782 241.23 radiation 10.0 10 < th dose independent rect. 20 10
815 241.38 wind 1.0 30 > th dose independent rect. 6 14
824 241.42 radiation 10.0 10 > th dose independent rect. 15 23
852 241.49 wind 1.0 90 < th dose dependent rect. 4 10
909 241.80 atmosphere 1015.0 90 < th dose dependent rect. 4 1
935 241.99 humidity 80.0 10 < th dose independent rect. 24 16
1000 242.19 temperature 25.0 90 < th dose independent rect. 4 1