Os10g0205500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDR3 ABC transporter.
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Os10g0205500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDR3 ABC transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.72 | 0.597 | 4.63 | 0.373 | 2.17 | -1.7 | 0.0804 | -1.64 | -0.0058 | 7.86 | 23.2 | 2068 | -- | -- |
| 166.46 | 0.601 | 4.71 | -0.256 | 2.17 | -1.73 | -0.0188 | -- | -0.186 | 7.88 | 23.2 | 2085 | -- | -- |
| 161.69 | 0.592 | 4.63 | 0.378 | 2.17 | -1.7 | -- | -1.64 | -0.00693 | 7.87 | 23.2 | 2090 | -- | -- |
| 166.05 | 0.6 | 4.71 | -0.261 | 2.19 | -1.75 | -- | -- | -0.206 | 7.87 | 23.3 | 2076 | -- | -- |
| 392.66 | 0.923 | 4.66 | 0.445 | -- | -1.87 | -- | -2.19 | 0.0772 | -- | 22.4 | 2948 | -- | -- |
| 289.86 | 0.798 | 4.54 | 0.479 | 2.07 | -- | -0.103 | -- | 0.565 | 7.66 | -- | -- | -- | -- |
| 289.89 | 0.797 | 4.54 | 0.476 | 2.07 | -- | -- | -- | 0.565 | 7.66 | -- | -- | -- | -- |
| 385.6 | 0.915 | 4.72 | -0.298 | -- | -1.87 | -- | -- | -0.116 | -- | 24.09 | 2853 | -- | -- |
| 167.64 | 0.603 | 4.69 | -- | 2.18 | -1.69 | -- | -- | -0.149 | 7.88 | 23.34 | 2076 | -- | -- |
| 520.58 | 1.07 | 4.59 | 0.504 | -- | -- | -- | -- | 0.596 | -- | -- | -- | -- | -- |
| 295.86 | 0.805 | 4.55 | -- | 2.07 | -- | -- | -- | 0.512 | 7.64 | -- | -- | -- | -- |
| 387.14 | 0.916 | 4.73 | -- | -- | -1.89 | -- | -- | -0.0389 | -- | 24.06 | 2836 | -- | -- |
| 527.28 | 1.07 | 4.6 | -- | -- | -- | -- | -- | 0.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.96 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 2 | 162.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 23 | 164.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 25 | 164.02 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 86 | 164.97 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 113 | 165.23 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 118 | 165.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 125 | 165.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 346 | 167.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 422 | 168.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 568 | 169.35 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 805 | 171.05 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 900 | 171.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 953 | 171.97 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |