Os10g0203600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0203600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.48 | 0.452 | 7.17 | -0.378 | 1.46 | 0.655 | -0.331 | 2.31 | 0.228 | 20 | 20.6 | 3888 | -- | -- |
| 97.25 | 0.459 | 7.24 | -0.635 | 1.44 | 0.364 | -0.342 | -- | 0.209 | 20.1 | 31 | 6193 | -- | -- |
| 92.71 | 0.448 | 7.18 | -0.357 | 1.45 | 0.647 | -- | 2.3 | 0.236 | 20 | 20.83 | 3907 | -- | -- |
| 96.93 | 0.459 | 7.25 | -0.694 | 1.47 | 0.34 | -- | -- | 0.211 | 20.1 | 32.01 | 6208 | -- | -- |
| 161.37 | 0.592 | 7.2 | -0.38 | -- | 1.13 | -- | 2.78 | 0.204 | -- | 28.2 | 601 | -- | -- |
| 101.79 | 0.473 | 7.25 | -0.63 | 1.47 | -- | -0.233 | -- | 0.213 | 20.1 | -- | -- | -- | -- |
| 101.96 | 0.473 | 7.25 | -0.623 | 1.47 | -- | -- | -- | 0.213 | 20.1 | -- | -- | -- | -- |
| 154.44 | 0.579 | 7.24 | -0.525 | -- | 1.31 | -- | -- | 0.0789 | -- | 28.2 | 575 | -- | -- |
| 109.76 | 0.488 | 7.23 | -- | 1.46 | 0.231 | -- | -- | 0.295 | 20.1 | 32.01 | 6177 | -- | -- |
| 220.37 | 0.694 | 7.21 | -0.636 | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
| 112.19 | 0.495 | 7.23 | -- | 1.47 | -- | -- | -- | 0.283 | 20.1 | -- | -- | -- | -- |
| 171.38 | 0.61 | 7.22 | -- | -- | 1.22 | -- | -- | 0.143 | -- | 28.3 | 575 | -- | -- |
| 231.03 | 0.709 | 7.19 | -- | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 2 | 90.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 4 | 91.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 14 | 91.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 17 | 91.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 19 | 91.52 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 22 | 91.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 28 | 91.62 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 34 | 91.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 40 | 91.67 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 43 | 91.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 52 | 91.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 54 | 91.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 60 | 91.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 79 | 91.84 | temperature | 25 | 30 | > th | dose independent | rect. | 12 | 8 |
| 80 | 91.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 90 | 91.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 128 | 91.98 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 134 | 91.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 11 |
| 166 | 92.06 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 174 | 92.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 182 | 92.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 187 | 92.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 238 | 92.18 | temperature | 30 | 10 | < th | dose dependent | sin | 19 | NA |
| 301 | 92.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 358 | 92.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 359 | 92.31 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 422 | 92.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 426 | 92.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 428 | 92.38 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 458 | 92.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 469 | 92.41 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 477 | 92.42 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 500 | 92.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 576 | 92.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 582 | 92.50 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 591 | 92.51 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 9 |
| 596 | 92.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 629 | 92.54 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 632 | 92.54 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 10 |
| 678 | 92.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 682 | 92.57 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 711 | 92.60 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 1 |
| 714 | 92.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 726 | 92.61 | radiation | 40 | 10 | > th | dose dependent | rect. | 10 | 2 |
| 735 | 92.62 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 882 | 92.72 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 939 | 92.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 940 | 92.75 | radiation | 20 | 30 | > th | dose independent | rect. | 11 | 1 |
| 963 | 92.76 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 964 | 92.76 | wind | 7 | 30 | < th | dose independent | rect. | 12 | 23 |