Os10g0202900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0202900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284.9 | 0.793 | 4.38 | 1.11 | 1.88 | -4 | -1.43 | -0.322 | 0.394 | 8.71 | 21.06 | 5178 | -- | -- |
| 285.02 | 0.786 | 4.37 | 1.17 | 1.88 | -3.95 | -1.43 | -- | 0.406 | 8.71 | 21.06 | 5183 | -- | -- |
| 291.51 | 0.795 | 4.37 | 1.07 | 1.88 | -3.92 | -- | -0.0823 | 0.413 | 8.72 | 21.14 | 5191 | -- | -- |
| 291.44 | 0.795 | 4.38 | 1.01 | 1.89 | -3.82 | -- | -- | 0.401 | 8.71 | 21.26 | 5196 | -- | -- |
| 491.38 | 1.03 | 4.41 | 1.14 | -- | -4.03 | -- | -0.0275 | 0.467 | -- | 21.15 | 5178 | -- | -- |
| 593.95 | 1.14 | 4.65 | -1.35 | 1.97 | -- | -1.28 | -- | -0.846 | 8.95 | -- | -- | -- | -- |
| 599.58 | 1.15 | 4.65 | -1.39 | 1.98 | -- | -- | -- | -0.847 | 8.97 | -- | -- | -- | -- |
| 491.4 | 1.03 | 4.41 | 1.16 | -- | -4.02 | -- | -- | 0.468 | -- | 21.15 | 5177 | -- | -- |
| 296.58 | 0.802 | 4.43 | -- | 1.88 | -3.06 | -- | -- | 0.235 | 8.6 | 22 | 3806 | -- | -- |
| 823.7 | 1.34 | 4.71 | -1.39 | -- | -- | -- | -- | -0.834 | -- | -- | -- | -- | -- |
| 650.64 | 1.19 | 4.62 | -- | 1.98 | -- | -- | -- | -0.692 | 9.02 | -- | -- | -- | -- |
| 490.53 | 1.03 | 4.45 | -- | -- | -3.19 | -- | -- | 0.295 | -- | 21.99 | 3686 | -- | -- |
| 874.94 | 1.38 | 4.67 | -- | -- | -- | -- | -- | -0.679 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 284.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 2 | 284.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 6 | 286.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 7 | 286.87 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 8 | 286.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 9 | 287.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 12 | 287.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 14 | 287.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 16 | 288.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 18 | 288.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 19 | 288.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 30 | 288.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 31 | 288.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 49 | 289.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 50 | 289.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 51 | 289.58 | radiation | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 62 | 289.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 64 | 289.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 67 | 289.88 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 68 | 289.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 117 | 289.99 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 125 | 290.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 129 | 290.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 166 | 290.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 168 | 290.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 171 | 290.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 188 | 290.70 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 189 | 290.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 209 | 290.88 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 222 | 290.93 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 227 | 291.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 229 | 291.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 254 | 291.19 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 264 | 291.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 281 | 291.41 | humidity | 90 | 43200 | > th | dose independent | sin | 23 | NA |
| 299 | 291.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 313 | 291.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 316 | 291.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 324 | 292.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 366 | 292.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 370 | 292.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 383 | 292.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 400 | 292.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 405 | 292.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 443 | 293.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 457 | 293.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 468 | 293.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 492 | 293.26 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 518 | 293.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 579 | 293.90 | humidity | 90 | 43200 | < th | dose independent | sin | 22 | NA |
| 585 | 293.95 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 617 | 294.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 639 | 294.23 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 663 | 294.34 | humidity | 90 | 43200 | > th | dose dependent | sin | 23 | NA |
| 678 | 294.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 712 | 294.52 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 745 | 294.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 791 | 294.85 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 819 | 294.99 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 846 | 295.10 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 847 | 295.10 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 928 | 295.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 948 | 295.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 962 | 295.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 994 | 295.82 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 21 |