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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0195000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0404) R2 : 0.00865
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.17 (0.0851) R2dN8 : 0.0112 R2N8 : 0.00865
σ : 0.761
deviance : 266.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.75 0.748 4.83 3.96 0.117 128 -0.687 267 -0.109 11.3 15 4231 -- --
261.78 0.759 3.04 -0.16 0.11 0.817 -0.607 -- -0.182 11.4 15 4231 -- --
255.48 0.744 4.82 3.94 0.099 128 -- 267 -0.0977 11.1 15.03 4092 -- --
257.52 0.747 3.02 0.111 0.106 0.873 -- -- -0.0773 11.6 19.61 3144 -- --
256.16 0.745 4.81 3.9 -- 128 -- 267 -0.113 -- 15.02 4092 -- --
263.03 0.76 3.04 -0.195 0.096 -- -0.514 -- -0.191 11.3 -- -- -- --
264.12 0.761 3.04 -0.215 0.102 -- -- -- -0.192 12.5 -- -- -- --
258.14 0.748 3.02 0.103 -- 0.857 -- -- -0.0768 -- 19.68 3151 -- --
257.71 0.748 3.02 -- 0.0984 0.783 -- -- -0.0957 11.9 19.57 3143 -- --
264.77 0.76 3.04 -0.218 -- -- -- -- -0.194 -- -- -- -- --
265.33 0.762 3.04 -- 0.105 -- -- -- -0.168 12.6 -- -- -- --
258.33 0.749 3.02 -- -- 0.781 -- -- -0.0964 -- 19.6 3148 -- --
266.03 0.761 3.04 -- -- -- -- -- -0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.80 temperature 20.0 90 < th dose dependent rect. 6 1
2 244.84 temperature 20.0 30 < th dose independent rect. 6 2
13 246.26 temperature 15.0 4320 > th dose independent rect. 9 4
15 246.67 radiation 1.0 30 < th dose dependent rect. 6 2
19 246.92 wind 5.0 90 < th dose independent rect. 12 1
22 247.26 wind 3.0 10 < th dose independent rect. 15 2
24 247.34 wind 3.0 10 < th dose dependent rect. 15 2
25 247.57 temperature 20.0 10 < th dose independent rect. 11 4
40 247.88 humidity 90.0 270 > th dose independent rect. 11 1
41 247.88 precipitation 0.1 270 > th dose independent rect. 10 1
46 247.88 humidity 90.0 270 > th dose dependent rect. 11 1
47 247.88 precipitation 0.1 270 > th dose dependent rect. 10 1
50 247.89 temperature 20.0 270 < th dose dependent rect. 10 1
52 247.92 temperature 20.0 270 < th dose independent rect. 10 1
69 248.56 temperature 15.0 4320 > th dose independent rect. 9 7
83 248.96 wind 7.0 90 < th dose dependent rect. 12 1
89 249.09 wind 3.0 14400 < th dose dependent rect. 15 1
96 249.48 temperature 20.0 10 < th dose dependent rect. 12 2
103 249.72 wind 7.0 30 < th dose independent rect. 12 20
110 249.83 radiation 40.0 4320 < th dose independent rect. 16 1
113 249.88 temperature 30.0 90 > th dose independent rect. 12 1
115 249.92 atmosphere 995.0 30 > th dose independent rect. 12 20
117 249.94 precipitation 0.1 30 < th dose independent rect. 12 20
119 249.94 precipitation 0.1 30 < th dose dependent rect. 12 20
127 250.02 precipitation 0.1 1440 > th dose independent rect. 10 1
129 250.02 precipitation 0.1 1440 > th dose dependent rect. 10 1
131 250.04 wind 3.0 14400 < th dose independent rect. 15 1
135 250.12 wind 9.0 30 < th dose independent rect. 8 4
139 250.20 wind 3.0 14400 > th dose independent rect. 15 1
146 250.23 atmosphere 995.0 1440 > th dose independent rect. 9 4
147 250.23 temperature 10.0 1440 > th dose independent rect. 13 20
154 250.32 precipitation 0.1 1440 < th dose independent rect. 10 3
155 250.32 temperature 10.0 30 > th dose independent rect. 8 4
157 250.32 atmosphere 995.0 30 > th dose independent rect. 8 4
158 250.32 atmosphere 1015.0 30 < th dose independent rect. 8 4
159 250.32 precipitation 0.1 30 < th dose independent rect. 8 4
160 250.32 temperature 10.0 30 > th dose independent rect. 12 20
161 250.32 precipitation 0.1 1440 < th dose dependent rect. 10 3
162 250.32 precipitation 0.1 30 < th dose dependent rect. 8 4
163 250.32 temperature 15.0 4320 < th dose dependent rect. 6 13
170 250.39 radiation 1.0 30 > th dose independent rect. 8 4
176 250.46 temperature 15.0 4320 < th dose dependent sin 23 NA
177 250.47 humidity 50.0 30 > th dose independent rect. 12 20
181 250.48 temperature 15.0 4320 < th dose dependent rect. 9 10
184 250.50 temperature 20.0 1440 > th dose independent rect. 16 1
185 250.50 temperature 15.0 4320 < th dose dependent rect. 5 16
187 250.53 temperature 15.0 4320 > th dose independent rect. 9 14
195 250.56 temperature 15.0 4320 > th dose independent rect. 9 11
196 250.56 temperature 20.0 4320 < th dose dependent rect. 12 7
208 250.60 temperature 20.0 4320 < th dose dependent rect. 12 1
212 250.63 wind 1.0 30 > th dose independent rect. 8 4
214 250.67 temperature 15.0 4320 < th dose independent rect. 9 11
223 250.69 temperature 20.0 1440 < th dose dependent rect. 10 1
278 250.86 atmosphere 1005.0 30 > th dose dependent rect. 12 3
290 250.89 temperature 15.0 4320 > th dose independent rect. 6 17
299 250.91 atmosphere 1005.0 90 > th dose dependent rect. 12 1
320 250.98 humidity 90.0 4320 > th dose dependent rect. 13 1
323 251.00 humidity 50.0 30 > th dose independent rect. 8 4
345 251.07 temperature 15.0 4320 < th dose dependent rect. 14 2
357 251.10 radiation 10.0 90 > th dose independent rect. 12 1
383 251.17 temperature 15.0 4320 < th dose independent rect. 14 3
389 251.19 wind 7.0 10 < th dose independent rect. 12 3
448 251.37 atmosphere 1015.0 30 < th dose independent rect. 12 20
455 251.39 temperature 15.0 4320 < th dose dependent rect. 18 1
460 251.40 temperature 15.0 4320 < th dose independent rect. 11 2
462 251.41 temperature 15.0 4320 > th dose independent rect. 17 6
465 251.43 temperature 15.0 4320 < th dose independent sin 22 NA
466 251.43 radiation 40.0 4320 < th dose independent rect. 16 14
475 251.45 temperature 15.0 4320 > th dose independent rect. 19 4
488 251.50 radiation 1.0 10 < th dose independent rect. 11 3
501 251.50 radiation 1.0 10 < th dose dependent rect. 11 3
511 251.51 radiation 10.0 30 > th dose independent rect. 15 21
515 251.53 temperature 15.0 4320 > th dose independent rect. 19 1
525 251.54 temperature 10.0 30 > th dose dependent rect. 8 4
537 251.59 temperature 15.0 4320 > th dose independent sin 22 NA
538 251.59 temperature 15.0 4320 < th dose independent rect. 18 1
570 251.63 temperature 15.0 4320 < th dose independent rect. 9 2
585 251.65 temperature 15.0 4320 > th dose independent rect. 21 2
603 251.70 radiation 1.0 10 < th dose independent rect. 13 1
616 251.70 radiation 1.0 10 < th dose dependent rect. 13 1
646 251.75 humidity 50.0 14400 > th dose independent rect. 18 11
653 251.79 radiation 40.0 30 > th dose dependent rect. 12 2
706 251.89 temperature 15.0 4320 > th dose independent rect. 17 3
712 251.91 humidity 90.0 4320 > th dose independent rect. 13 1
719 251.93 radiation 20.0 10 < th dose independent rect. 15 1
722 251.93 humidity 90.0 30 > th dose dependent rect. 6 4
738 251.96 humidity 80.0 90 < th dose independent rect. 12 1
758 251.99 humidity 90.0 30 > th dose dependent rect. 6 2
764 252.01 precipitation 0.1 270 < th dose independent rect. 9 23
766 252.01 precipitation 0.1 270 < th dose dependent rect. 9 23
778 252.06 wind 1.0 14400 > th dose independent rect. 14 9
783 252.07 wind 1.0 14400 < th dose independent rect. 14 9
786 252.08 wind 1.0 14400 > th dose independent rect. 13 11
794 252.10 wind 1.0 14400 < th dose independent rect. 12 11
801 252.12 humidity 50.0 14400 < th dose independent rect. 8 1
821 252.12 humidity 50.0 14400 < th dose dependent rect. 8 1
830 252.12 atmosphere 995.0 10 > th dose dependent rect. 12 7
839 252.12 humidity 50.0 30 > th dose dependent rect. 12 21
841 252.13 wind 1.0 14400 > th dose dependent rect. 15 1
846 252.14 wind 1.0 14400 < th dose dependent rect. 12 11
861 252.18 wind 1.0 90 > th dose independent rect. 12 20
862 252.18 precipitation 0.1 90 < th dose independent rect. 13 23
865 252.18 precipitation 0.1 90 < th dose dependent rect. 13 23
868 252.19 temperature 30.0 30 > th dose dependent rect. 12 2
888 252.24 radiation 1.0 90 < th dose independent rect. 6 1
904 252.27 wind 1.0 14400 < th dose dependent sin 18 NA
917 252.31 temperature 10.0 30 > th dose dependent rect. 20 16
936 252.36 temperature 30.0 10 < th dose independent rect. 15 1
956 252.41 wind 1.0 14400 < th dose independent rect. 12 15
958 252.41 temperature 20.0 10 > th dose dependent rect. 20 16
963 252.42 humidity 90.0 10 < th dose dependent rect. 19 17
984 252.48 wind 1.0 14400 < th dose dependent rect. 12 15
1000 252.52 humidity 50.0 14400 > th dose independent rect. 18 6