Os10g0194500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0194500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.1 | 0.57 | 5.34 | 0.636 | 0.26 | 1.83 | 0.517 | -0.296 | -0.111 | 12.5 | 25 | 741 | -- | -- |
| 147.2 | 0.565 | 5.35 | 0.583 | 0.258 | 1.86 | 0.484 | -- | -0.124 | 12.5 | 24.92 | 740 | -- | -- |
| 146.59 | 0.564 | 5.36 | 0.55 | 0.453 | 1.89 | -- | 0.0947 | -0.137 | 13.8 | 24.7 | 477 | -- | -- |
| 146.56 | 0.564 | 5.35 | 0.584 | 0.454 | 1.92 | -- | -- | -0.125 | 13.9 | 24.7 | 478 | -- | -- |
| 151.2 | 0.573 | 5.35 | 0.59 | -- | 1.98 | -- | 0.0836 | -0.082 | -- | 25.71 | 835 | -- | -- |
| 199.12 | 0.662 | 5.43 | 0.0615 | 0.482 | -- | 0.486 | -- | -0.508 | 11.7 | -- | -- | -- | -- |
| 200.04 | 0.662 | 5.43 | 0.0824 | 0.482 | -- | -- | -- | -0.505 | 12.1 | -- | -- | -- | -- |
| 151.14 | 0.573 | 5.34 | 0.64 | -- | 1.98 | -- | -- | -0.0778 | -- | 25.7 | 843 | -- | -- |
| 154.66 | 0.579 | 5.36 | -- | 0.46 | 1.73 | -- | -- | -0.198 | 13.4 | 24.57 | 437 | -- | -- |
| 214.65 | 0.685 | 5.44 | 0.0671 | -- | -- | -- | -- | -0.512 | -- | -- | -- | -- | -- |
| 200.22 | 0.662 | 5.43 | -- | 0.481 | -- | -- | -- | -0.514 | 12.1 | -- | -- | -- | -- |
| 160.64 | 0.59 | 5.37 | -- | -- | 1.71 | -- | -- | -0.199 | -- | 25.7 | 827 | -- | -- |
| 214.77 | 0.684 | 5.44 | -- | -- | -- | -- | -- | -0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 3 | 138.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 7 | 139.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 11 | 140.11 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 31 | 141.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 36 | 141.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 54 | 142.69 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 59 | 142.85 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 64 | 142.98 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 68 | 143.06 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 85 | 143.44 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 98 | 143.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 114 | 144.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 120 | 144.33 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 125 | 144.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 130 | 144.54 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 136 | 144.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 148 | 144.83 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 158 | 144.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 348 | 146.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 368 | 146.12 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 481 | 146.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 489 | 146.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 538 | 146.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 606 | 146.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 622 | 146.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 632 | 146.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 646 | 146.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 661 | 146.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 709 | 147.11 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 960 | 147.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 964 | 147.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |