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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0194300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.06 (0.0312) R2 : 0.753
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.54 (0.0811) R2dC : 0.541 R2C : 0.492
β3 : 2.3 (0.106) R2dE : 0.276 R2E : 0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.214 (0.0677) R2dN8 : 0.00765 R2N8 : -0.0148
σ : 0.581
deviance : 155.48
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_____
C
peak time of C : 17.5
E
wheather : temperature
threshold : 18.23
memory length : 3025
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.34 0.559 5.99 1.1 2.46 1.97 0.425 1.35 -0.0145 17.6 19.32 1606 -- --
142.98 0.557 6.04 0.746 2.48 2.02 0.434 -- -0.133 17.6 19.62 1595 -- --
141.77 0.555 5.99 1.11 2.45 1.99 -- 1.38 -0.0119 17.6 19.23 1623 -- --
143.37 0.558 6.04 0.731 2.46 2 -- -- -0.126 17.6 19.79 1612 -- --
243.49 0.727 6.04 0.451 -- 3.74 -- -0.358 -0.341 -- 19.2 329 -- --
257.64 0.752 5.93 1.47 2.48 -- 0.373 -- 0.346 17.7 -- -- -- --
257.98 0.752 5.93 1.47 2.48 -- -- -- 0.348 17.7 -- -- -- --
243.3 0.726 6.04 0.529 -- 3.81 -- -- -0.339 -- 18.84 330 -- --
155.48 0.581 6.06 -- 2.54 2.3 -- -- -0.214 17.5 18.23 3025 -- --
577.36 1.12 5.9 1.39 -- -- -- -- 0.289 -- -- -- -- --
315.01 0.83 5.97 -- 2.46 -- -- -- 0.184 17.7 -- -- -- --
249.39 0.736 6.06 -- -- 4.46 -- -- -0.419 -- 16.27 327 -- --
628.49 1.17 5.93 -- -- -- -- -- 0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.80 temperature 30 270 < th dose dependent rect. 24 22
13 136.81 temperature 30 4320 < th dose dependent rect. 21 1
14 136.90 temperature 10 4320 > th dose dependent rect. 21 1
16 137.85 temperature 30 1440 < th dose dependent rect. 18 1
19 138.41 temperature 10 270 > th dose dependent rect. 5 23
25 138.92 temperature 15 270 > th dose dependent rect. 16 23
26 138.93 temperature 20 1440 > th dose dependent rect. 18 1
36 139.56 temperature 30 1440 < th dose dependent rect. 17 3
71 140.47 temperature 20 1440 > th dose dependent rect. 17 4
73 140.49 temperature 15 270 > th dose dependent rect. 18 23
159 141.66 temperature 20 1440 > th dose dependent rect. 16 19
219 142.25 temperature 30 270 < th dose dependent rect. 9 23
361 143.37 temperature 20 1440 > th dose dependent sin 15 NA
393 143.60 temperature 30 270 < th dose dependent rect. 12 23
401 143.68 temperature 10 4320 > th dose dependent sin 13 NA
408 143.71 temperature 20 1440 > th dose dependent no NA NA
421 143.77 temperature 20 1440 > th dose dependent rect. 23 23
436 143.85 temperature 20 1440 > th dose dependent rect. 6 23
457 143.91 temperature 20 1440 > th dose dependent rect. 3 23
480 144.00 temperature 30 4320 < th dose dependent sin 12 NA
547 144.21 temperature 20 1440 > th dose dependent sin 7 NA
673 144.65 temperature 30 1440 < th dose dependent rect. 16 19
724 144.82 temperature 30 270 < th dose dependent no NA NA
833 145.06 temperature 20 1440 > th dose dependent rect. 3 6
842 145.08 temperature 20 1440 > th dose dependent rect. 24 11
935 145.28 wind 5 43200 < th dose independent rect. 20 1