FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0193500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0385) R2 : 0.111
β1 : -0.112 (0.144) R2dD : 0.0013 R2D : -0.00613
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.99 (0.327) R2dE : 0.111 R2E : -0.039
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -16.2 (2.29) R2dD*E : 0.152 R2D*E : -0.00063
γ1 : -0.0119 (0.0821) R2dN8 : 5.54e-05 R2N8 : -0.00117
σ : 0.716
deviance : 236.48
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 55.43
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.56
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.78 0.72 2.87 -0.117 0.0454 2 -0.83 -16.5 -0.0159 5.15 55.95 8 6.73 --
260.84 0.758 2.84 0.0954 0.0558 0.803 -0.158 -- -0.0267 5.62 54.51 7 7.84 --
236.38 0.716 2.87 -0.114 0.0438 2.02 -- -16.1 -0.0122 4.55 55.45 7 6.57 --
260.87 0.757 2.84 0.0936 0.0581 0.829 -- -- -0.0264 4.42 54.23 7 7.57 --
236.48 0.716 2.87 -0.112 -- 1.99 -- -16.2 -0.0119 -- 55.43 7 6.56 --
265.08 0.763 2.85 0.121 0.0144 -- 0.31 -- -0.0458 18.8 -- -- -- --
265.32 0.763 2.85 0.115 0.0155 -- -- -- -0.0449 18.6 -- -- -- --
261.04 0.756 2.84 0.0968 -- 0.795 -- -- -0.026 -- 54.37 7 7.47 --
261.1 0.757 2.85 -- 0.0607 0.84 -- -- -0.0366 4.4 54.41 7 7.55 --
265.33 0.761 2.85 0.115 -- -- -- -- -0.0452 -- -- -- -- --
265.67 0.762 2.85 -- 0.0142 -- -- -- -0.0578 19.1 -- -- -- --
261.28 0.755 2.85 -- -- 0.804 -- -- -0.0365 -- 54.66 7 7.46 --
265.68 0.761 2.85 -- -- -- -- -- -0.058 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.82 radiation 30 90 > th dose dependent rect. 15 17
2 230.27 radiation 30 90 > th dose independent rect. 15 17
3 231.91 radiation 30 90 > th dose dependent rect. 15 1
66 232.14 radiation 40 90 > th dose independent rect. 15 1
130 232.30 radiation 20 10 > th dose independent rect. 16 1
241 233.84 wind 1 90 < th dose dependent rect. 15 2
261 234.60 humidity 60 10 < th dose dependent rect. 15 4
276 234.62 humidity 60 10 < th dose independent rect. 15 3
277 234.63 humidity 60 10 < th dose independent rect. 15 1
311 235.16 humidity 60 90 < th dose independent rect. 15 1
366 235.60 humidity 60 10 < th dose dependent rect. 15 1
407 236.64 wind 1 90 < th dose independent rect. 15 2
511 239.18 wind 3 10 < th dose independent rect. 16 1
513 239.22 wind 3 10 < th dose dependent rect. 16 1
583 239.74 humidity 60 10 < th dose independent sin 13 NA
586 239.93 temperature 20 10 < th dose dependent rect. 3 1
593 240.22 humidity 60 10 > th dose independent sin 12 NA
600 240.55 humidity 60 10 < th dose dependent sin 12 NA
713 243.36 radiation 30 30 < th dose independent sin 13 NA
807 244.08 temperature 20 90 < th dose independent rect. 2 1
882 245.21 atmosphere 1005 30 < th dose dependent rect. 16 1
907 245.69 atmosphere 1005 90 < th dose dependent rect. 14 1
921 245.92 humidity 90 90 > th dose independent rect. 9 1
922 245.92 humidity 90 90 > th dose dependent rect. 9 1
923 245.94 radiation 20 30 > th dose independent sin 13 NA
946 246.23 atmosphere 1005 10 < th dose dependent rect. 14 3