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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0192500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.38 (0.035) R2 : 0.944
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.02 (0.111) R2dC : 0.0676 R2C : -0.222
β3 : 1.05 (0.145) R2dE : 0.0107 R2E : -0.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -6.26 (0.0737) R2dN8 : 1.14 R2N8 : 0.9
σ : 0.656
deviance : 198.34
__
_____
C
peak time of C : 21.4
E
wheather : humidity
threshold : 71.89
memory length : 813
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.94 0.658 9.37 0.28 2.04 1.12 -0.511 -0.469 -6.22 21.4 71.05 807 -- --
196.17 0.652 9.37 0.249 2.03 1.1 -0.339 -- -6.22 21.4 71.49 813 -- --
196.6 0.653 9.38 0.265 2.05 1.11 -- -0.0548 -6.23 21.4 71 813 -- --
196.6 0.653 9.38 0.26 2.04 1.1 -- -- -6.23 21.4 71.03 813 -- --
330.18 0.851 9.33 0.18 -- 0.494 -- -0.356 -6.29 -- 73.73 1512 -- --
219.14 0.694 9.38 0.096 1.5 -- -0.497 -- -6.29 21.8 -- -- -- --
220.08 0.695 9.38 0.115 1.51 -- -- -- -6.29 21.8 -- -- -- --
330.92 0.851 9.33 0.169 -- 0.491 -- -- -6.29 -- 74 1527 -- --
198.34 0.656 9.38 -- 2.02 1.05 -- -- -6.26 21.4 71.89 813 -- --
355.33 0.881 9.34 0.13 -- -- -- -- -6.29 -- -- -- -- --
220.43 0.695 9.38 -- 1.51 -- -- -- -6.31 21.8 -- -- -- --
331.67 0.851 9.34 -- -- 0.488 -- -- -6.31 -- 74 1527 -- --
355.78 0.88 9.34 -- -- -- -- -- -6.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.09 temperature 10.0 720 > th dose dependent rect. 23 8
2 185.27 temperature 25.0 10 < th dose independent rect. 13 15
4 185.71 temperature 20.0 720 > th dose independent rect. 23 8
6 185.93 temperature 20.0 720 > th dose independent rect. 23 5
8 186.05 temperature 15.0 720 > th dose dependent rect. 23 5
12 186.55 humidity 70.0 1440 > th dose independent rect. 11 1
17 186.89 temperature 25.0 10 > th dose independent rect. 16 10
21 187.11 temperature 25.0 270 < th dose independent rect. 4 7
27 187.33 temperature 20.0 720 > th dose independent rect. 1 2
28 187.38 temperature 20.0 720 > th dose independent rect. 21 10
32 187.68 temperature 25.0 270 < th dose dependent rect. 4 6
36 187.96 temperature 20.0 720 < th dose independent rect. 23 8
40 188.19 temperature 25.0 30 > th dose independent rect. 16 14
45 188.41 temperature 25.0 720 < th dose dependent rect. 23 7
51 188.52 temperature 25.0 720 < th dose dependent rect. 24 5
62 188.78 temperature 15.0 720 > th dose dependent rect. 1 3
67 188.94 humidity 70.0 1440 > th dose dependent rect. 11 1
68 188.95 radiation 40.0 720 > th dose independent rect. 13 1
73 189.04 temperature 20.0 270 > th dose dependent rect. 23 12
83 189.20 temperature 20.0 720 > th dose independent rect. 21 12
93 189.29 temperature 30.0 720 > th dose independent rect. 13 1
94 189.32 temperature 20.0 720 > th dose independent rect. 19 12
97 189.41 temperature 20.0 720 < th dose independent rect. 1 2
118 189.73 temperature 20.0 720 > th dose independent rect. 19 14
132 189.96 temperature 20.0 720 > th dose independent sin 10 NA
133 189.97 wind 3.0 14400 < th dose dependent rect. 4 2
136 190.03 wind 3.0 14400 < th dose dependent rect. 24 6
143 190.18 temperature 25.0 30 > th dose independent sin 14 NA
147 190.21 radiation 40.0 720 > th dose independent rect. 11 3
179 190.62 temperature 20.0 720 < th dose independent sin 9 NA
180 190.64 humidity 80.0 1440 < th dose independent rect. 6 8
181 190.64 wind 3.0 14400 < th dose dependent rect. 24 1
184 190.66 temperature 25.0 720 < th dose dependent rect. 1 2
196 190.80 humidity 80.0 1440 < th dose independent rect. 8 5
199 190.81 temperature 20.0 720 > th dose independent rect. 21 14
202 190.82 humidity 80.0 1440 < th dose dependent rect. 2 10
206 190.84 humidity 80.0 1440 < th dose dependent rect. 4 8
219 190.95 humidity 80.0 1440 > th dose independent rect. 6 8
220 190.96 humidity 80.0 1440 < th dose dependent rect. 9 3
227 190.99 humidity 80.0 1440 < th dose independent rect. 11 1
235 191.06 temperature 25.0 10 < th dose independent sin 15 NA
240 191.11 temperature 20.0 720 < th dose independent rect. 3 1
244 191.12 humidity 70.0 1440 > th dose independent rect. 2 10
250 191.15 humidity 70.0 1440 > th dose independent rect. 24 12
257 191.17 humidity 70.0 1440 > th dose independent rect. 22 14
258 191.17 humidity 70.0 1440 > th dose independent rect. 20 16
259 191.17 humidity 50.0 1440 > th dose dependent rect. 11 1
263 191.18 precipitation 0.1 4320 > th dose dependent rect. 14 3
264 191.19 humidity 70.0 1440 > th dose independent rect. 6 6
288 191.33 radiation 40.0 720 > th dose independent rect. 11 22
313 191.37 temperature 25.0 270 < th dose dependent rect. 7 1
316 191.39 precipitation 0.1 4320 > th dose dependent rect. 16 1
326 191.47 precipitation 0.1 4320 > th dose dependent rect. 1 16
327 191.51 precipitation 0.1 14400 > th dose independent rect. 14 2
333 191.54 humidity 90.0 1440 < th dose dependent rect. 11 1
335 191.54 precipitation 0.1 4320 > th dose dependent rect. 3 14
362 191.68 precipitation 0.1 14400 < th dose independent rect. 14 2
365 191.68 precipitation 0.1 14400 < th dose dependent rect. 14 2
385 191.79 temperature 25.0 720 < th dose dependent rect. 3 2
400 191.87 precipitation 0.1 4320 < th dose independent rect. 3 14
401 191.87 precipitation 0.1 4320 < th dose dependent rect. 3 14
418 191.93 humidity 80.0 1440 < th dose dependent sin 6 NA
425 191.95 precipitation 0.1 4320 > th dose independent rect. 3 14
452 192.12 precipitation 0.1 14400 > th dose independent rect. 6 11
466 192.19 precipitation 0.1 14400 < th dose independent rect. 6 11
467 192.19 precipitation 0.1 14400 < th dose dependent rect. 6 11
482 192.30 humidity 50.0 1440 > th dose dependent rect. 9 3
484 192.32 wind 1.0 14400 > th dose independent rect. 1 1
501 192.39 precipitation 0.1 4320 < th dose independent rect. 1 16
502 192.39 precipitation 0.1 4320 < th dose dependent rect. 1 16
511 192.44 precipitation 0.1 4320 > th dose independent rect. 1 16
525 192.48 radiation 40.0 720 > th dose independent rect. 13 20
526 192.49 temperature 25.0 270 < th dose independent rect. 7 2
557 192.60 radiation 20.0 720 > th dose independent rect. 11 5
559 192.60 temperature 25.0 720 < th dose dependent sin 9 NA
561 192.61 precipitation 0.1 4320 > th dose independent rect. 1 19
562 192.61 precipitation 0.1 4320 < th dose independent rect. 1 19
565 192.61 precipitation 0.1 4320 < th dose dependent rect. 1 19
569 192.62 precipitation 0.1 4320 > th dose dependent rect. 1 19
600 192.78 radiation 20.0 720 > th dose independent rect. 11 20
604 192.79 humidity 70.0 1440 > th dose independent sin 7 NA
638 192.85 precipitation 0.1 4320 < th dose independent rect. 16 1
639 192.85 precipitation 0.1 4320 < th dose dependent rect. 16 1
641 192.86 precipitation 0.1 4320 > th dose dependent rect. 7 10
689 193.01 radiation 40.0 720 > th dose independent sin 16 NA
724 193.07 wind 3.0 14400 < th dose independent rect. 21 9
734 193.11 precipitation 0.1 4320 > th dose independent rect. 16 1
744 193.14 precipitation 0.1 4320 > th dose dependent sin 3 NA
791 193.31 precipitation 0.1 4320 > th dose independent sin 2 NA
793 193.32 precipitation 0.1 4320 < th dose independent sin 2 NA
794 193.32 precipitation 0.1 4320 < th dose dependent sin 2 NA
808 193.35 precipitation 0.1 4320 > th dose dependent rect. 10 7
809 193.35 temperature 30.0 30 < th dose dependent rect. 4 8
850 193.45 wind 1.0 14400 > th dose independent rect. 4 3
910 193.59 wind 3.0 14400 < th dose independent rect. 24 1
911 193.59 wind 1.0 14400 < th dose independent rect. 4 3
919 193.61 temperature 20.0 270 > th dose dependent sin 6 NA
927 193.64 radiation 1.0 720 > th dose dependent rect. 11 19
955 193.75 temperature 10.0 270 > th dose dependent sin 6 NA
973 193.80 radiation 1.0 720 > th dose dependent rect. 11 6
994 193.84 humidity 80.0 1440 > th dose independent sin 4 NA
995 193.84 wind 3.0 14400 > th dose independent rect. 21 9