Os10g0192000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os10g0192000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.72 | 0.644 | 2.67 | 0.565 | 0.0064 | -1.5 | 0.74 | 5.55 | -0.061 | 9.56 | 50.76 | 4380 | -- | -- |
| 198.06 | 0.66 | 2.79 | 0.471 | 0.0296 | -0.488 | 0.712 | -- | -0.0503 | 9.44 | 42 | 1622 | -- | -- |
| 189.54 | 0.641 | 2.69 | 0.587 | 0.0122 | -1.35 | -- | 5.1 | -0.0988 | 8.29 | 51.85 | 4382 | -- | -- |
| 197.58 | 0.655 | 2.8 | 0.543 | 0.052 | -0.444 | -- | -- | -0.0927 | 22 | 63.93 | 911 | -- | -- |
| 189.51 | 0.641 | 2.69 | 0.583 | -- | -1.23 | -- | 4.82 | -0.0772 | -- | 52.11 | 4381 | -- | -- |
| 198.73 | 0.661 | 2.79 | 0.454 | 0.0217 | -- | 0.668 | -- | -0.0481 | 9.2 | -- | -- | -- | -- |
| 200.28 | 0.663 | 2.78 | 0.476 | 0.0338 | -- | -- | -- | -0.0482 | 5.86 | -- | -- | -- | -- |
| 197.69 | 0.655 | 2.8 | 0.538 | -- | -0.408 | -- | -- | -0.0976 | -- | 63.84 | 906 | -- | -- |
| 204.92 | 0.667 | 2.81 | -- | 0.0376 | -0.297 | -- | -- | -0.141 | 22 | 64 | 848 | -- | -- |
| 200.34 | 0.661 | 2.79 | 0.477 | -- | -- | -- | -- | -0.0474 | -- | -- | -- | -- | -- |
| 206.25 | 0.672 | 2.8 | -- | 0.0416 | -- | -- | -- | -0.101 | 5.31 | -- | -- | -- | -- |
| 205 | 0.667 | 2.81 | -- | -- | -0.277 | -- | -- | -0.14 | -- | 64 | 852 | -- | -- |
| 206.34 | 0.67 | 2.8 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.84 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 93 | 180.84 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 185 | 182.26 | wind | 5.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 186 | 182.68 | wind | 5.0 | 720 | > th | dose independent | rect. | 24 | 9 |
| 187 | 182.88 | wind | 3.0 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 190 | 183.14 | wind | 3.0 | 720 | > th | dose independent | rect. | 2 | 1 |
| 199 | 183.65 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 205 | 183.99 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 209 | 184.16 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 210 | 184.17 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 222 | 184.34 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 225 | 184.40 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 244 | 184.76 | atmosphere | 1010.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 245 | 184.76 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 327 | 185.11 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 331 | 185.16 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 337 | 185.21 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 399 | 185.83 | wind | 5.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 402 | 185.86 | wind | 5.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 403 | 185.87 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 416 | 186.00 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 437 | 186.12 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 441 | 186.14 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 465 | 186.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 468 | 186.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 483 | 186.36 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 490 | 186.39 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 493 | 186.40 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 510 | 186.43 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 512 | 186.43 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 515 | 186.44 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 600 | 186.92 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 605 | 186.94 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 617 | 186.98 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 637 | 187.05 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 643 | 187.06 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 647 | 187.06 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 653 | 187.07 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 4 |
| 664 | 187.07 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 680 | 187.09 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 687 | 187.10 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 24 | 1 |
| 690 | 187.10 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 753 | 187.21 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 788 | 187.27 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 793 | 187.28 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 800 | 187.29 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 815 | 187.33 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 816 | 187.34 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 829 | 187.36 | wind | 3.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 889 | 187.48 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 911 | 187.56 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 917 | 187.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 918 | 187.56 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 963 | 187.66 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 996 | 187.71 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |