Os10g0191300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.
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Os10g0191300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.78 | 0.445 | 3.06 | -0.53 | 0.221 | 0.321 | -0.262 | -4.17 | 0.0106 | 9.81 | 48.92 | 1622 | -- | -- |
| 99.93 | 0.466 | 3.1 | -0.407 | 0.216 | 0.799 | -0.59 | -- | -0.0649 | 12.8 | 56.07 | 1564 | -- | -- |
| 89.99 | 0.442 | 3.07 | -0.545 | 0.213 | 0.289 | -- | -4.34 | 0.00641 | 10 | 49.77 | 1621 | -- | -- |
| 96.32 | 0.457 | 3.05 | -0.317 | 0.351 | 1.07 | -- | -- | 0.0452 | 9.68 | 56.84 | 1621 | -- | -- |
| 92.85 | 0.449 | 3.07 | -0.49 | -- | 0.374 | -- | -4.35 | 0.0254 | -- | 50.57 | 1621 | -- | -- |
| 104.66 | 0.48 | 3.07 | -0.365 | 0.257 | -- | -0.437 | -- | 0.0341 | 10.4 | -- | -- | -- | -- |
| 105.43 | 0.481 | 3.07 | -0.382 | 0.259 | -- | -- | -- | 0.0332 | 10.6 | -- | -- | -- | -- |
| 91.92 | 0.447 | 3.06 | 0.0397 | -- | 1.52 | -- | -- | 0.113 | -- | 68.28 | 1544 | -- | -- |
| 91.31 | 0.445 | 3 | -- | 0.232 | 1.58 | -- | -- | 0.158 | 10.1 | 64.43 | 2154 | -- | -- |
| 109.54 | 0.489 | 3.07 | -0.387 | -- | -- | -- | -- | 0.0319 | -- | -- | -- | -- | -- |
| 109.27 | 0.489 | 3.06 | -- | 0.261 | -- | -- | -- | 0.0757 | 10.7 | -- | -- | -- | -- |
| 91.65 | 0.446 | 3.05 | -- | -- | 1.67 | -- | -- | 0.148 | -- | 67.55 | 1544 | -- | -- |
| 113.49 | 0.497 | 3.06 | -- | -- | -- | -- | -- | 0.0748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.19 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 23 | 83.19 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 34 | 83.19 | humidity | 80 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 47 | 83.44 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 57 | 83.44 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 75 | 85.79 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 125 | 90.10 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 126 | 90.12 | radiation | 1 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 128 | 90.67 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 132 | 90.97 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 133 | 90.99 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 135 | 91.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 136 | 91.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 138 | 91.11 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 2 |
| 172 | 91.72 | radiation | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 193 | 92.44 | radiation | 1 | 10 | < th | dose independent | rect. | 6 | 1 |
| 195 | 92.47 | humidity | 80 | 270 | < th | dose independent | rect. | 2 | 1 |
| 198 | 92.47 | humidity | 80 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 242 | 93.71 | humidity | 80 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 245 | 93.77 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 23 |
| 253 | 93.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 294 | 94.28 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 319 | 94.67 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 367 | 94.83 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 16 |
| 370 | 94.86 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 374 | 94.94 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 419 | 95.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 427 | 95.29 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 450 | 95.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 461 | 95.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 476 | 95.50 | humidity | 80 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 515 | 95.54 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 569 | 95.70 | humidity | 80 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 574 | 95.72 | radiation | 10 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 579 | 95.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 584 | 95.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 596 | 95.75 | radiation | 10 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 645 | 95.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 661 | 95.97 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 6 |
| 674 | 96.01 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 10 | 1 |
| 727 | 96.06 | radiation | 10 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 736 | 96.07 | radiation | 40 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 759 | 96.08 | radiation | 40 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 767 | 96.10 | radiation | 40 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 799 | 96.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 806 | 96.18 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 809 | 96.19 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 811 | 96.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 813 | 96.21 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 18 |
| 814 | 96.22 | radiation | 10 | 4320 | > th | dose independent | sin | 11 | NA |
| 831 | 96.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 838 | 96.26 | radiation | 40 | 90 | < th | dose independent | rect. | 7 | 12 |
| 845 | 96.28 | humidity | 50 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 850 | 96.29 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 874 | 96.30 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 876 | 96.31 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 883 | 96.33 | radiation | 20 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 895 | 96.34 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 939 | 96.38 | radiation | 40 | 1440 | > th | dose dependent | sin | 17 | NA |
| 971 | 96.46 | radiation | 1 | 1440 | > th | dose dependent | sin | 13 | NA |
| 987 | 96.48 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 2 |