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Os10g0190900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.46 (0.0285) R2 : 0.499
β1 : -1.49 (0.106) R2dD : 0.233 R2D : 0.293
β2 : 0.882 (0.072) R2dC : 0.18 R2C : 0.0998
β3 : -0.971 (0.114) R2dE : 0.0929 R2E : 0.0897
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.044 (0.0614) R2dN8 : 0.000781 R2N8 : 0.0082
σ : 0.531
deviance : 130.22
__
_____
C
peak time of C : 2.11
E
wheather : humidity
threshold : 73.34
memory length : 1150
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.21 0.536 9.46 -1.5 0.875 -0.958 -0.0398 -0.131 0.0269 2.16 71.74 1154 -- --
130.22 0.531 9.46 -1.49 0.874 -0.967 -0.0714 -- 0.0334 2.15 72.41 1152 -- --
130.2 0.531 9.46 -1.5 0.879 -0.955 -- -0.148 0.0386 2.12 72.85 1153 -- --
130.22 0.531 9.46 -1.49 0.882 -0.971 -- -- 0.044 2.11 73.34 1150 -- --
148.47 0.568 9.44 -1.58 -- -1.05 -- 0.0259 0.0736 -- 85 201 -- --
150.11 0.574 9.43 -1.67 0.724 -- -0.376 -- 0.122 2.72 -- -- -- --
150.54 0.575 9.43 -1.66 0.721 -- -- -- 0.124 2.54 -- -- -- --
148.41 0.567 9.44 -1.58 -- -1.06 -- -- 0.107 -- 85 220 -- --
186.22 0.636 9.42 -- 0.923 -1.29 -- -- 0.164 2.05 72.54 1162 -- --
181.02 0.629 9.43 -1.63 -- -- -- -- 0.142 -- -- -- -- --
223.44 0.699 9.39 -- 0.688 -- -- -- 0.31 2.51 -- -- -- --
212.88 0.68 9.4 -- -- -1.2 -- -- 0.275 -- 82 261 -- --
251.32 0.74 9.39 -- -- -- -- -- 0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.53 temperature 20.0 90 > th dose independent rect. 19 9
2 122.65 temperature 15.0 90 > th dose dependent rect. 19 8
6 123.11 temperature 15.0 10 > th dose dependent rect. 20 8
7 123.30 temperature 20.0 10 > th dose independent rect. 20 8
27 125.38 temperature 10.0 270 > th dose dependent rect. 18 19
30 125.47 temperature 20.0 90 > th dose independent rect. 20 18
32 125.48 temperature 20.0 90 > th dose independent rect. 19 20
46 126.19 temperature 20.0 10 > th dose independent rect. 20 18
49 126.29 wind 3.0 14400 > th dose independent rect. 2 2
51 126.42 temperature 20.0 10 > th dose independent rect. 20 20
68 127.02 wind 3.0 14400 < th dose independent rect. 2 2
99 127.95 temperature 10.0 10 > th dose dependent rect. 20 18
111 128.07 temperature 10.0 10 > th dose dependent rect. 20 20
115 128.22 humidity 50.0 720 > th dose independent rect. 9 22
123 128.33 atmosphere 1010.0 90 < th dose independent rect. 19 8
129 128.39 humidity 50.0 720 > th dose independent rect. 9 14
138 128.54 humidity 70.0 720 > th dose independent rect. 17 12
152 128.85 humidity 50.0 720 > th dose independent rect. 11 9
154 128.89 humidity 70.0 270 > th dose independent rect. 9 17
177 129.36 wind 9.0 14400 < th dose independent sin 6 NA
179 129.39 humidity 70.0 720 > th dose independent rect. 17 4
181 129.39 radiation 1.0 90 < th dose dependent sin 13 NA
183 129.41 radiation 1.0 270 > th dose independent rect. 14 3
185 129.46 wind 9.0 14400 < th dose independent rect. 3 11
187 129.47 humidity 50.0 720 > th dose independent rect. 9 12
200 129.57 humidity 60.0 720 > th dose independent rect. 15 14
201 129.58 atmosphere 995.0 90 > th dose dependent rect. 3 16
213 129.73 atmosphere 1010.0 30 < th dose independent rect. 20 18
216 129.74 humidity 50.0 270 > th dose independent rect. 17 21
225 129.84 humidity 50.0 720 > th dose independent sin 22 NA
233 129.92 radiation 1.0 90 < th dose dependent rect. 19 22
242 130.01 humidity 60.0 720 > th dose independent sin 11 NA
243 130.02 humidity 50.0 720 > th dose independent rect. 9 9
250 130.06 atmosphere 995.0 10 > th dose dependent rect. 3 17
252 130.08 humidity 50.0 720 > th dose independent rect. 4 17
255 130.10 humidity 80.0 14400 < th dose dependent rect. 6 1
257 130.11 atmosphere 1015.0 270 < th dose independent rect. 17 21
260 130.12 humidity 80.0 1440 < th dose dependent sin 8 NA
262 130.13 humidity 80.0 720 < th dose dependent rect. 18 16
273 130.21 radiation 1.0 90 < th dose independent rect. 19 22
275 130.22 wind 9.0 14400 < th dose independent rect. 5 7
276 130.22 atmosphere 1015.0 10 < th dose dependent rect. 20 18
279 130.23 humidity 80.0 270 < th dose independent rect. 14 3
308 130.41 humidity 50.0 270 > th dose dependent rect. 9 16
313 130.45 radiation 1.0 270 > th dose independent rect. 14 16
325 130.52 radiation 1.0 90 < th dose independent sin 13 NA
327 130.52 humidity 80.0 1440 < th dose dependent rect. 17 19
335 130.55 radiation 1.0 90 < th dose dependent rect. 5 22
338 130.57 radiation 1.0 270 > th dose independent rect. 14 5
382 130.70 radiation 1.0 30 < th dose independent rect. 20 20
392 130.76 humidity 80.0 720 < th dose dependent sin 11 NA
394 130.77 precipitation 0.1 90 < th dose independent rect. 3 16
395 130.77 humidity 80.0 1440 < th dose dependent rect. 23 13
397 130.77 precipitation 0.1 90 < th dose dependent rect. 3 16
398 130.78 atmosphere 1010.0 10 < th dose independent rect. 20 8
399 130.79 humidity 90.0 1440 < th dose dependent rect. 2 11
406 130.84 humidity 80.0 1440 > th dose independent rect. 7 1
415 130.87 radiation 1.0 270 > th dose independent sin 15 NA
421 130.88 radiation 1.0 270 < th dose independent rect. 11 15
428 130.89 radiation 1.0 270 < th dose dependent rect. 11 15
447 130.96 humidity 60.0 1440 < th dose independent rect. 16 19
462 131.00 humidity 70.0 270 > th dose independent sin 17 NA
465 131.01 humidity 80.0 90 < th dose independent rect. 14 6
472 131.03 radiation 1.0 270 < th dose dependent sin 16 NA
475 131.04 humidity 60.0 1440 > th dose independent rect. 16 19
483 131.07 radiation 1.0 30 < th dose independent rect. 20 18
491 131.08 humidity 50.0 720 > th dose dependent rect. 9 12
493 131.09 wind 9.0 14400 > th dose independent sin 6 NA
497 131.10 radiation 1.0 270 < th dose independent rect. 5 22
499 131.11 humidity 80.0 10 < th dose independent rect. 14 6
507 131.12 radiation 1.0 270 < th dose independent sin 16 NA
509 131.12 wind 9.0 14400 > th dose independent rect. 5 7
533 131.18 temperature 10.0 270 > th dose dependent rect. 14 3
540 131.21 humidity 80.0 1440 < th dose independent rect. 7 1
543 131.21 humidity 80.0 10 < th dose independent rect. 14 18
554 131.24 humidity 60.0 1440 < th dose dependent rect. 15 21
558 131.27 temperature 25.0 270 > th dose independent rect. 14 3
559 131.27 humidity 80.0 1440 < th dose independent rect. 6 3
584 131.35 humidity 70.0 720 > th dose independent rect. 17 17
585 131.35 atmosphere 1015.0 90 < th dose dependent rect. 19 8
588 131.36 humidity 90.0 1440 < th dose dependent rect. 7 1
592 131.37 wind 9.0 14400 > th dose dependent rect. 12 1
596 131.39 atmosphere 1000.0 90 > th dose independent rect. 3 16
632 131.47 wind 9.0 270 < th dose independent rect. 17 21
642 131.51 humidity 60.0 1440 < th dose independent sin 10 NA
645 131.51 atmosphere 1010.0 10 < th dose independent rect. 20 20
683 131.56 atmosphere 1015.0 90 < th dose dependent rect. 19 20
687 131.57 wind 9.0 14400 > th dose independent rect. 4 9
693 131.58 temperature 20.0 270 > th dose independent rect. 8 17
698 131.59 humidity 50.0 10 > th dose independent rect. 20 18
728 131.66 humidity 80.0 1440 < th dose independent rect. 3 10
741 131.69 atmosphere 1015.0 10 < th dose dependent rect. 20 20
776 131.75 humidity 80.0 10 < th dose independent rect. 16 4
798 131.78 humidity 80.0 30 < th dose independent rect. 14 16
799 131.78 humidity 80.0 10 < th dose independent rect. 16 16
800 131.78 atmosphere 1000.0 10 > th dose independent rect. 4 16
809 131.80 humidity 60.0 1440 < th dose dependent sin 10 NA
827 131.84 atmosphere 1015.0 270 < th dose independent rect. 9 14
828 131.84 humidity 90.0 270 < th dose dependent rect. 14 3
862 131.93 radiation 1.0 30 < th dose independent rect. 20 16
880 131.97 wind 7.0 90 < th dose independent rect. 19 8
882 131.97 temperature 30.0 90 < th dose independent rect. 19 8
883 131.97 humidity 50.0 90 > th dose independent rect. 19 8
885 131.97 atmosphere 995.0 90 > th dose independent rect. 19 8
886 131.97 radiation 1.0 90 < th dose independent rect. 19 8
894 131.97 temperature 15.0 270 > th dose independent rect. 9 14
895 131.97 wind 9.0 14400 > th dose independent rect. 22 16
896 131.97 temperature 10.0 90 > th dose independent rect. 3 16
897 131.97 atmosphere 1015.0 90 < th dose independent rect. 3 16
898 131.97 radiation 1.0 90 < th dose dependent rect. 19 8
909 131.98 temperature 20.0 270 > th dose independent rect. 6 20
921 132.00 precipitation 0.1 90 < th dose independent rect. 19 8
923 132.00 radiation 1.0 30 < th dose independent rect. 20 12
931 132.00 precipitation 0.1 90 < th dose dependent rect. 19 8
933 132.01 precipitation 0.1 270 < th dose independent rect. 14 3
939 132.01 precipitation 0.1 270 < th dose dependent rect. 14 3
942 132.02 atmosphere 995.0 270 > th dose independent rect. 14 3
987 132.10 humidity 50.0 270 > th dose dependent rect. 18 20
995 132.12 atmosphere 995.0 270 > th dose dependent rect. 14 3