Os10g0188400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0188400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.17 | 0.546 | 4.56 | -1.66 | 0.527 | 1.56 | 0.127 | -0.992 | -0.145 | 4.07 | 20.6 | 2138 | -- | -- |
| 137.5 | 0.546 | 4.53 | -1.48 | 0.512 | 1.73 | 0.0984 | -- | -0.0893 | 4.18 | 20.35 | 2199 | -- | -- |
| 135.21 | 0.542 | 4.56 | -1.66 | 0.526 | 1.56 | -- | -0.996 | -0.146 | 4.12 | 20.65 | 2140 | -- | -- |
| 136.96 | 0.545 | 4.52 | -1.53 | 0.497 | 1.79 | -- | -- | -0.0446 | 4.24 | 19.6 | 2396 | -- | -- |
| 148 | 0.567 | 4.56 | -1.66 | -- | 1.59 | -- | -0.881 | -0.153 | -- | 20.65 | 2471 | -- | -- |
| 200.1 | 0.663 | 4.44 | -0.67 | 0.561 | -- | 0.0208 | -- | 0.322 | 3.48 | -- | -- | -- | -- |
| 200.1 | 0.662 | 4.44 | -0.671 | 0.562 | -- | -- | -- | 0.322 | 3.49 | -- | -- | -- | -- |
| 148.69 | 0.568 | 4.53 | -1.62 | -- | 1.9 | -- | -- | -0.0887 | -- | 19.5 | 2474 | -- | -- |
| 171.69 | 0.61 | 4.51 | -- | 0.531 | 1.02 | -- | -- | 0.14 | 4.12 | 22.39 | 1283 | -- | -- |
| 217.76 | 0.69 | 4.44 | -0.647 | -- | -- | -- | -- | 0.337 | -- | -- | -- | -- | -- |
| 211.96 | 0.681 | 4.42 | -- | 0.548 | -- | -- | -- | 0.397 | 3.5 | -- | -- | -- | -- |
| 181.2 | 0.627 | 4.5 | -- | -- | 0.973 | -- | -- | 0.0996 | -- | 22.3 | 1052 | -- | -- |
| 228.8 | 0.706 | 4.42 | -- | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 2 | 135.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 8 | 135.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 10 | 135.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 11 | 135.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 13 | 136.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 14 | 136.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 15 | 136.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 32 | 136.51 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 45 | 136.66 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 62 | 136.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 76 | 136.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 85 | 137.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 146 | 137.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 167 | 137.79 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 181 | 137.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 189 | 138.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 228 | 138.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 260 | 138.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 404 | 139.25 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 409 | 139.27 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 453 | 139.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 460 | 139.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 476 | 139.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 477 | 139.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 506 | 139.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 691 | 140.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 767 | 140.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 803 | 140.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 895 | 140.79 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 897 | 140.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 931 | 140.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 944 | 140.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |