Os10g0188000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0188000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.9 | 0.269 | 7.87 | 1.3 | 0.691 | -0.882 | 0.32 | -0.0529 | 0.245 | 23.2 | 25.66 | 77 | -- | -- |
| 32.88 | 0.267 | 7.87 | 1.29 | 0.695 | -0.879 | 0.312 | -- | 0.242 | 23.2 | 25.84 | 71 | -- | -- |
| 33.23 | 0.268 | 7.87 | 1.27 | 0.694 | -0.855 | -- | 0.166 | 0.24 | 23.1 | 25.8 | 70 | -- | -- |
| 33.27 | 0.269 | 7.87 | 1.29 | 0.689 | -0.87 | -- | -- | 0.248 | 23 | 25.44 | 70 | -- | -- |
| 48.1 | 0.323 | 7.84 | 1.38 | -- | -0.98 | -- | -0.444 | 0.274 | -- | 30.14 | 808 | -- | -- |
| 44.04 | 0.311 | 7.83 | 1.5 | 0.579 | -- | 0.233 | -- | 0.429 | 22.2 | -- | -- | -- | -- |
| 44.26 | 0.312 | 7.83 | 1.5 | 0.578 | -- | -- | -- | 0.428 | 22.2 | -- | -- | -- | -- |
| 47.73 | 0.322 | 7.85 | 1.23 | -- | -1.01 | -- | -- | 0.251 | -- | 30.93 | 798 | -- | -- |
| 72.38 | 0.396 | 7.93 | -- | 0.807 | -1.37 | -- | -- | -0.00967 | 23.8 | 26.67 | 89 | -- | -- |
| 64.53 | 0.375 | 7.81 | 1.5 | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
| 103.22 | 0.475 | 7.86 | -- | 0.586 | -- | -- | -- | 0.262 | 22.4 | -- | -- | -- | -- |
| 82.73 | 0.424 | 7.91 | -- | -- | -1.49 | -- | -- | -0.00534 | -- | 29.8 | 840 | -- | -- |
| 124.19 | 0.52 | 7.85 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 32.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 4 | 32.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 7 | 32.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 12 | 32.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 33 | 33.03 | temperature | 25 | 10 | < th | dose dependent | sin | 17 | NA |
| 47 | 33.11 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 59 | 33.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 63 | 33.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 65 | 33.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 70 | 33.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 76 | 33.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 77 | 33.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 243 | 33.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 257 | 34.00 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 302 | 34.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 318 | 34.21 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 12 |
| 320 | 34.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 332 | 34.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 353 | 34.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 362 | 34.37 | temperature | 15 | 270 | > th | dose dependent | sin | 13 | NA |
| 410 | 34.47 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 415 | 34.48 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 421 | 34.49 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 437 | 34.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 470 | 34.62 | temperature | 15 | 720 | > th | dose dependent | sin | 18 | NA |
| 476 | 34.63 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 12 |
| 480 | 34.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 483 | 34.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 503 | 34.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 513 | 34.68 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 9 |
| 525 | 34.70 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 562 | 34.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 13 |
| 585 | 34.80 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 4 |
| 621 | 34.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 629 | 34.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 681 | 34.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 943 | 35.20 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |