Os10g0187500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os10g0187500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.91 | 0.204 | 10.3 | 1.08 | 0.672 | 0.603 | -0.144 | 0.313 | 0.199 | 23.8 | 1015 | 6161 | -- | -- |
| 18.94 | 0.203 | 10.3 | 1.07 | 0.681 | 0.47 | -0.145 | -- | 0.207 | 23.7 | 1014 | 6164 | -- | -- |
| 19 | 0.203 | 10.3 | 1.09 | 0.672 | 0.581 | -- | 0.257 | 0.201 | 23.8 | 1015 | 6163 | -- | -- |
| 19.01 | 0.203 | 10.3 | 1.08 | 0.672 | 0.466 | -- | -- | 0.204 | 23.8 | 1014 | 6213 | -- | -- |
| 47.4 | 0.321 | 10.3 | 1.11 | -- | 0.554 | -- | 0.219 | 0.208 | -- | 1015 | 6313 | -- | -- |
| 24.68 | 0.233 | 10.3 | 0.892 | 0.672 | -- | -0.146 | -- | 0.115 | 23.7 | -- | -- | -- | -- |
| 24.77 | 0.233 | 10.3 | 0.898 | 0.673 | -- | -- | -- | 0.115 | 23.7 | -- | -- | -- | -- |
| 47.39 | 0.321 | 10.3 | 1.1 | -- | 0.465 | -- | -- | 0.214 | -- | 1014 | 6305 | -- | -- |
| 43.35 | 0.307 | 10.3 | -- | 0.689 | 0.387 | -- | -- | 0.0511 | 23.9 | 1014 | 4118 | -- | -- |
| 53.25 | 0.341 | 10.3 | 0.917 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 46 | 0.317 | 10.3 | -- | 0.684 | -- | -- | -- | 0.0152 | 23.8 | -- | -- | -- | -- |
| 65.94 | 0.378 | 10.3 | -- | -- | -0.504 | -- | -- | -0.103 | -- | 1012 | 47520 | -- | -- |
| 75.42 | 0.405 | 10.3 | -- | -- | -- | -- | -- | 0.0217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.65 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 3 | 19.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 4 | 19.79 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 10 | 19.90 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 19 |
| 25 | 19.94 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 32 | 19.95 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 34 | 19.96 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 37 | 19.96 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 18 | NA |
| 39 | 19.96 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 41 | 19.96 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 20 |
| 51 | 19.97 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 18 | 13 |
| 99 | 20.00 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 100 | 20.00 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 114 | 20.01 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 123 | 20.01 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 15 | 22 |
| 128 | 20.02 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 160 | 20.03 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 164 | 20.04 | wind | 9.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 203 | 20.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 204 | 20.06 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 13 |
| 216 | 20.07 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 17 | NA |
| 221 | 20.07 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 238 | 20.07 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 240 | 20.08 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 270 | 20.09 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 293 | 20.10 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 345 | 20.12 | wind | 9.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 434 | 20.15 | wind | 9.0 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 553 | 20.19 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 604 | 20.20 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 711 | 20.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 731 | 20.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 795 | 20.25 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 816 | 20.26 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 854 | 20.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 872 | 20.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 879 | 20.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 964 | 20.29 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 984 | 20.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |