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Os10g0184200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.42 (0.028) R2 : 0.614
β1 : 3.42 (0.144) R2dD : 1.04 R2D : -0.0421
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.51 (0.105) R2dE : 0.198 R2E : -0.0299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.81 (0.545) R2dD*E : 0.276 R2D*E : -0.458
γ1 : 0.763 (0.0582) R2dN8 : 0.196 R2N8 : 0.0262
σ : 0.508
deviance : 119.09
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C
peak time of C : --
E
wheather : radiation
threshold : 0.4166
memory length : 1440
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.57 0.507 8.42 3.46 0.0541 -1.55 1.06 -6.95 0.77 4.17 0.3948 1442 18.1 11
150.39 0.571 8.38 2.1 0.194 -1.19 0.867 -- 0.802 4.37 2.418 1446 17.7 11.9
119.14 0.508 8.42 3.42 0.0376 -1.54 -- -6.9 0.766 4.38 0.4145 1441 18.3 11
150.57 0.572 8.38 2.04 0.122 -1.25 -- -- 0.788 2.31 2.574 1446 17.8 12
119.09 0.508 8.42 3.42 -- -1.51 -- -6.81 0.763 -- 0.4166 1440 18.3 11
193.43 0.652 8.35 1.88 0.114 -- 1.05 -- 0.685 4.96 -- -- -- --
196.21 0.656 8.35 1.88 0.123 -- -- -- 0.68 5.62 -- -- -- --
150.98 0.572 8.38 2.07 -- -1.2 -- -- 0.787 -- 2.549 1442 17.8 11.9
147.74 0.566 8.32 -- 0.102 -1.83 -- -- 0.265 2.58 0.03363 47520 19.1 12.3
197 0.656 8.35 1.88 -- -- -- -- 0.683 -- -- -- -- --
289.45 0.796 8.4 -- 0.155 -- -- -- 0.471 5.09 -- -- -- --
146.55 0.564 8.32 -- -- -1.88 -- -- 0.269 -- 0.0003631 47520 18.8 11.9
290.72 0.796 8.4 -- -- -- -- -- 0.474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.91 radiation 1 43200 < th dose dependent rect. 2 3
2 114.93 radiation 1 43200 < th dose dependent rect. 4 1
5 115.08 radiation 1 43200 < th dose dependent rect. 20 9
21 121.50 radiation 1 43200 > th dose independent rect. 18 1
31 121.80 radiation 1 43200 < th dose independent rect. 18 9
32 121.81 radiation 1 43200 < th dose independent rect. 18 3
33 121.81 radiation 1 43200 < th dose independent rect. 18 5
34 121.81 radiation 1 43200 < th dose independent rect. 18 7
39 121.83 radiation 1 43200 < th dose independent rect. 18 1
42 122.33 radiation 1 1440 < th dose dependent rect. 18 11
45 123.07 radiation 1 14400 < th dose dependent rect. 18 7
47 123.08 radiation 1 14400 < th dose dependent rect. 18 3
53 123.11 radiation 1 14400 < th dose dependent rect. 18 1
55 123.92 radiation 1 1440 < th dose dependent rect. 18 3
56 123.95 radiation 1 1440 < th dose dependent rect. 18 9
57 123.96 radiation 1 1440 < th dose dependent rect. 18 7
58 124.04 radiation 40 14400 < th dose dependent rect. 18 9
64 124.10 radiation 1 1440 < th dose dependent rect. 18 1
70 124.27 radiation 30 14400 < th dose dependent rect. 18 7
79 124.35 radiation 20 14400 < th dose dependent rect. 18 3
133 125.21 humidity 90 43200 > th dose independent rect. 23 1
148 125.50 humidity 90 43200 > th dose dependent rect. 4 2
161 126.45 humidity 90 43200 > th dose dependent rect. 22 8
168 126.84 humidity 60 43200 < th dose dependent rect. 10 1
170 126.90 humidity 90 43200 > th dose dependent rect. 23 1
182 127.30 humidity 90 43200 > th dose dependent rect. 22 5
221 127.89 humidity 90 43200 > th dose dependent sin 11 NA
227 127.95 humidity 90 14400 > th dose independent rect. 2 1
281 128.16 humidity 70 43200 < th dose independent rect. 5 4
311 128.35 humidity 90 43200 > th dose independent rect. 20 10
326 128.46 wind 1 43200 < th dose dependent rect. 20 1
328 128.47 humidity 60 43200 < th dose independent rect. 23 13
356 128.59 radiation 1 14400 < th dose dependent rect. 18 20
358 128.60 radiation 1 14400 < th dose dependent rect. 18 18
468 129.13 humidity 90 43200 > th dose independent sin 13 NA
497 129.24 radiation 1 43200 < th dose dependent rect. 7 22
499 129.25 humidity 60 43200 < th dose dependent rect. 5 6
545 129.43 radiation 1 14400 < th dose dependent rect. 14 15
553 129.46 radiation 1 14400 < th dose dependent rect. 9 20
607 129.69 humidity 90 43200 > th dose dependent no NA NA
615 129.75 humidity 90 14400 < th dose independent rect. 2 1
641 129.90 humidity 90 43200 < th dose independent rect. 22 3
645 129.93 humidity 90 43200 > th dose dependent rect. 2 23
654 129.98 radiation 1 14400 < th dose dependent sin 16 NA
658 129.99 radiation 1 14400 < th dose dependent rect. 8 15
663 130.00 radiation 1 14400 < th dose dependent rect. 8 13
667 130.01 radiation 1 14400 < th dose dependent rect. 8 11
699 130.10 radiation 1 14400 < th dose dependent rect. 14 9
708 130.11 radiation 1 14400 < th dose dependent rect. 14 7
715 130.12 radiation 1 14400 < th dose dependent rect. 14 5
807 130.22 humidity 90 43200 > th dose dependent rect. 5 23
823 130.27 humidity 90 14400 < th dose independent rect. 24 3
872 130.44 radiation 30 14400 > th dose independent rect. 15 17
934 130.67 humidity 90 43200 > th dose independent rect. 4 2
949 130.74 humidity 90 43200 < th dose independent rect. 17 11