Os10g0182000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS).
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Os10g0182000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.52 | 0.218 | 13.9 | 1 | 0.886 | 0.433 | -0.208 | -1.05 | 0.242 | 19 | 24.9 | 1386 | -- | -- |
| 22.12 | 0.221 | 13.9 | 0.777 | 0.903 | 0.64 | -0.3 | -- | 0.164 | 18.6 | 22.17 | 2024 | -- | -- |
| 21.64 | 0.217 | 13.9 | 1.01 | 0.886 | 0.437 | -- | -1.06 | 0.242 | 19 | 24.9 | 1384 | -- | -- |
| 22.27 | 0.221 | 13.9 | 0.792 | 0.9 | 0.852 | -- | -- | 0.145 | 18.7 | 20.01 | 4843 | -- | -- |
| 62.77 | 0.369 | 13.8 | 1.02 | -- | 0.503 | -- | -1.09 | 0.247 | -- | 25.64 | 1384 | -- | -- |
| 26.46 | 0.241 | 13.9 | 0.658 | 0.898 | -- | -0.288 | -- | 0.0942 | 18.9 | -- | -- | -- | -- |
| 26.67 | 0.242 | 13.9 | 0.663 | 0.897 | -- | -- | -- | 0.0934 | 18.9 | -- | -- | -- | -- |
| 63.78 | 0.372 | 13.9 | 0.82 | -- | 0.681 | -- | -- | 0.182 | -- | 22.05 | 1395 | -- | -- |
| 37.32 | 0.286 | 13.9 | -- | 0.889 | 0.377 | -- | -- | 0.0362 | 18.9 | 20.01 | 4843 | -- | -- |
| 68.87 | 0.388 | 13.9 | 0.645 | -- | -- | -- | -- | 0.0766 | -- | -- | -- | -- | -- |
| 38.26 | 0.289 | 13.9 | -- | 0.889 | -- | -- | -- | 0.0195 | 19 | -- | -- | -- | -- |
| 73.72 | 0.4 | 13.9 | -- | -- | -0.61 | -- | -- | -0.067 | -- | 35.76 | 465 | -- | -- |
| 79.83 | 0.417 | 13.9 | -- | -- | -- | -- | -- | 0.00508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 11 | 21.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 16 | 21.10 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 64 | 21.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 74 | 21.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 11 |
| 109 | 21.36 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 10 | 15 |
| 124 | 21.38 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 148 | 21.39 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 172 | 21.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 21 |
| 191 | 21.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 212 | 21.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 255 | 21.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 307 | 21.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 324 | 21.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 333 | 21.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 374 | 21.49 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 454 | 21.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 483 | 21.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 485 | 21.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 22 |
| 501 | 21.53 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 539 | 21.54 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 580 | 21.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 638 | 21.56 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 640 | 21.56 | atmosphere | 1005 | 270 | > th | dose dependent | sin | 19 | NA |
| 642 | 21.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 676 | 21.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 771 | 21.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 832 | 21.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |