Os10g0181200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os10g0181200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.94 | 0.322 | 12.8 | -0.316 | 0.773 | -0.331 | 0.304 | -1.59 | -0.232 | 21.5 | 22 | 1215 | -- | -- |
| 52.32 | 0.337 | 12.8 | -0.795 | 0.779 | -0.324 | 0.368 | -- | -0.329 | 21.2 | 25 | 1181 | -- | -- |
| 47.24 | 0.32 | 12.8 | -0.329 | 0.745 | -0.329 | -- | -1.55 | -0.23 | 21.5 | 22 | 1028 | -- | -- |
| 52.65 | 0.338 | 12.8 | -0.821 | 0.743 | -0.365 | -- | -- | -0.354 | 21.3 | 24.7 | 1176 | -- | -- |
| 68.49 | 0.385 | 12.8 | -0.529 | -- | -0.665 | -- | -1.21 | -0.386 | -- | 25.2 | 739 | -- | -- |
| 56.31 | 0.352 | 12.8 | -0.698 | 0.79 | -- | 0.501 | -- | -0.251 | 21.7 | -- | -- | -- | -- |
| 57.25 | 0.354 | 12.8 | -0.716 | 0.789 | -- | -- | -- | -0.252 | 21.7 | -- | -- | -- | -- |
| 69.53 | 0.388 | 12.8 | -0.885 | -- | -0.714 | -- | -- | -0.505 | -- | 25.2 | 749 | -- | -- |
| 69.69 | 0.389 | 12.8 | -- | 0.75 | -0.176 | -- | -- | -0.232 | 21.4 | 25.1 | 1086 | -- | -- |
| 94.12 | 0.453 | 12.8 | -0.709 | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
| 70.77 | 0.394 | 12.8 | -- | 0.787 | -- | -- | -- | -0.172 | 21.6 | -- | -- | -- | -- |
| 90.99 | 0.444 | 12.8 | -- | -- | -0.579 | -- | -- | -0.366 | -- | 25.28 | 704 | -- | -- |
| 107.4 | 0.484 | 12.7 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.80 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 2 | 46.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 3 | 47.15 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 4 | 47.19 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 6 | 47.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 7 | 47.39 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 8 | 47.39 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 10 | 47.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 12 | 47.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 20 | 47.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 35 | 47.87 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 45 | 48.04 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 51 | 48.08 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 61 | 48.15 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 75 | 48.25 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 78 | 48.28 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 82 | 48.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 15 |
| 85 | 48.32 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 88 | 48.35 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 102 | 48.44 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 112 | 48.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 125 | 48.54 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 127 | 48.55 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 146 | 48.63 | wind | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 147 | 48.63 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 149 | 48.63 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 175 | 48.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 197 | 48.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 198 | 48.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 239 | 48.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 244 | 48.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 247 | 48.81 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 271 | 48.84 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 290 | 48.86 | wind | 1 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 291 | 48.86 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 308 | 48.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 309 | 48.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 313 | 48.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 322 | 48.90 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 18 |
| 341 | 48.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 441 | 49.00 | wind | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 465 | 49.02 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 20 |
| 476 | 49.03 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 478 | 49.03 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 531 | 49.07 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 16 |
| 539 | 49.08 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 548 | 49.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 551 | 49.09 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 22 |
| 604 | 49.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 644 | 49.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 649 | 49.16 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 652 | 49.16 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 20 |
| 736 | 49.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 771 | 49.23 | temperature | 25 | 720 | < th | dose independent | sin | 7 | NA |
| 774 | 49.23 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 20 |
| 803 | 49.25 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 811 | 49.25 | radiation | 1 | 4320 | < th | dose dependent | rect. | 20 | 10 |
| 816 | 49.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 18 |
| 837 | 49.27 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 18 |
| 842 | 49.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 876 | 49.29 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 903 | 49.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 984 | 49.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 991 | 49.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 13 |