Os10g0178800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os10g0178800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.01 | 0.782 | 20.7 | 53.5 | 0.0579 | 8180 | 0.971 | 24600 | -0.082 | 16.8 | 0.9947 | 90 | 8 | 0.998 |
| 63692722.35 | 372 | -23.4 | 246 | 1.36 | 7960 | 45.6 | -- | 112 | 2.99 | 2.134 | 42 | 9.29 | 0.186 |
| 283.84 | 0.785 | 20.7 | 53.5 | 0.122 | 8180 | -- | 24600 | -0.0773 | 20.5 | 0.9479 | 90 | 8.02 | 1.01 |
| 54844344.23 | 345 | -14.4 | 571 | 281 | 6820 | -- | -- | 119 | 19.6 | 1.77 | 41 | 9.22 | 0.384 |
| 284.67 | 0.786 | 20.7 | 53.5 | -- | 8180 | -- | 24600 | -0.0787 | -- | 0.9299 | 89 | 8.02 | 1.01 |
| 312.48 | 0.829 | 2.95 | 0.0225 | 0.0556 | -- | 1.09 | -- | -0.106 | 17.4 | -- | -- | -- | -- |
| 315.27 | 0.831 | 2.95 | 0.0187 | 0.0802 | -- | -- | -- | -0.102 | 19.9 | -- | -- | -- | -- |
| 51518177.83 | 334 | -31.4 | 555 | -- | 6760 | -- | -- | 165 | -- | 1.742 | 41 | 9.25 | 0.397 |
| 47072298.92 | 320 | 44.9 | -- | 133 | 6800 | -- | -- | 17.4 | 21.6 | 2.461 | 42 | 8.82 | 0.501 |
| 315.62 | 0.83 | 2.95 | 0.0178 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 315.28 | 0.831 | 2.95 | -- | 0.0801 | -- | -- | -- | -0.104 | 19.9 | -- | -- | -- | -- |
| 45732585.8 | 315 | -6.62 | -- | -- | 6770 | -- | -- | 45.3 | -- | 2.128 | 43 | 8.87 | 0.647 |
| 315.63 | 0.829 | 2.95 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.03 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 4 | 282.03 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 7 | 283.39 | temperature | 20.0 | 90 | < th | dose independent | rect. | 16 | 3 |
| 8 | 283.46 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 12 | 284.08 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 18 | 284.91 | temperature | 20.0 | 90 | < th | dose independent | rect. | 13 | 6 |
| 60 | 286.64 | wind | 5.0 | 30 | > th | dose dependent | rect. | 19 | 3 |
| 74 | 287.00 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 3 |
| 79 | 287.06 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 82 | 287.06 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 163 | 289.11 | wind | 7.0 | 90 | > th | dose independent | rect. | 19 | 3 |
| 295 | 296.34 | wind | 7.0 | 30 | < th | dose independent | sin | 11 | NA |
| 312 | 296.68 | wind | 5.0 | 30 | > th | dose dependent | sin | 10 | NA |
| 325 | 297.00 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 327 | 297.00 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 343 | 297.10 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 11 |
| 349 | 297.11 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 367 | 297.14 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 5 |
| 386 | 297.27 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 397 | 297.27 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 413 | 297.48 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 1 |
| 421 | 297.70 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 9 |
| 427 | 297.77 | radiation | 40.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 444 | 297.77 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 481 | 298.01 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 495 | 298.29 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 16 |
| 509 | 298.48 | wind | 7.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 518 | 298.53 | wind | 7.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 519 | 298.53 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 13 |
| 553 | 298.66 | wind | 7.0 | 90 | > th | dose independent | rect. | 7 | 2 |
| 559 | 298.71 | wind | 7.0 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 628 | 298.97 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 20 |
| 666 | 299.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 667 | 299.28 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 18 | 4 |
| 671 | 299.30 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 700 | 299.59 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 2 |
| 717 | 299.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 13 | 7 |
| 727 | 299.77 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 4 |
| 728 | 299.77 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 13 |
| 734 | 299.83 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 744 | 299.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 749 | 299.96 | humidity | 80.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 759 | 300.02 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 794 | 300.21 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 805 | 300.28 | precipitation | 0.1 | 90 | > th | dose independent | sin | 18 | NA |
| 819 | 300.37 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 20 |
| 823 | 300.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 831 | 300.45 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 832 | 300.45 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 835 | 300.45 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 839 | 300.46 | temperature | 25.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 843 | 300.49 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 851 | 300.53 | precipitation | 0.1 | 90 | < th | dose independent | sin | 19 | NA |
| 853 | 300.53 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 19 | NA |
| 868 | 300.58 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 18 | 8 |
| 892 | 300.66 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 3 |
| 895 | 300.68 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 938 | 300.80 | temperature | 25.0 | 720 | < th | dose independent | rect. | 8 | 6 |
| 949 | 300.85 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 951 | 300.86 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 962 | 300.88 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 980 | 300.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 997 | 300.93 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 17 |