Os10g0177300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Type III polyketide synthase family protein.
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Os10g0177300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Type III polyketide synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.27 | 0.32 | 3.07 | 0.817 | 0.0766 | 0.521 | 0.114 | -4.27 | 0.0837 | 7.36 | 29.73 | 1828 | -- | -- |
| 47.74 | 0.322 | 3.17 | 0.0631 | 0.114 | 0.0659 | 0.113 | -- | -0.0216 | 6.48 | 34.2 | 1980 | -- | -- |
| 46.3 | 0.317 | 3.07 | 0.817 | 0.0777 | 0.52 | -- | -4.26 | 0.0834 | 6.91 | 29.74 | 1828 | -- | -- |
| 47.72 | 0.322 | 3.17 | 0.0635 | 0.114 | 0.0654 | -- | -- | -0.0259 | 6.3 | 34.2 | 1920 | -- | -- |
| 46.6 | 0.318 | 3.07 | 0.838 | -- | 0.549 | -- | -4.41 | 0.0839 | -- | 29.7 | 1867 | -- | -- |
| 47.95 | 0.325 | 3.16 | 0.0501 | 0.112 | -- | 0.0405 | -- | -0.0149 | 6.66 | -- | -- | -- | -- |
| 47.95 | 0.324 | 3.16 | 0.0507 | 0.112 | -- | -- | -- | -0.0151 | 6.56 | -- | -- | -- | -- |
| 47.95 | 0.322 | 3.16 | 0.0325 | -- | -0.225 | -- | -- | -0.00538 | -- | 35.67 | 5925 | -- | -- |
| 47.83 | 0.322 | 3.17 | -- | 0.114 | 0.0588 | -- | -- | -0.0317 | 6.3 | 34.2 | 1918 | -- | -- |
| 48.61 | 0.326 | 3.17 | 0.0534 | -- | -- | -- | -- | -0.0128 | -- | -- | -- | -- | -- |
| 48.02 | 0.324 | 3.16 | -- | 0.113 | -- | -- | -- | -0.0207 | 6.54 | -- | -- | -- | -- |
| 47.98 | 0.323 | 3.16 | -- | -- | -0.237 | -- | -- | -0.0101 | -- | 35.63 | 5795 | -- | -- |
| 48.68 | 0.326 | 3.17 | -- | -- | -- | -- | -- | -0.0187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.54 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 42.62 | wind | 3.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 3 | 42.63 | wind | 5.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 12 | 42.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 14 | 42.71 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 15 | 42.71 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 18 | 42.71 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 19 | 42.71 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 21 | 42.71 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 26 | 42.71 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 1 |
| 27 | 42.71 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 28 | 42.71 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 33 | 42.71 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 35 | 42.73 | radiation | 40.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 52 | 42.73 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 70 | 42.74 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 71 | 42.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 73 | 42.76 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 181 | 42.89 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 184 | 42.91 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 187 | 42.92 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 209 | 42.96 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 213 | 42.97 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 299 | 43.22 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 314 | 43.24 | humidity | 60.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 378 | 43.61 | wind | 1.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 416 | 43.77 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 438 | 43.84 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 495 | 44.22 | wind | 3.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 497 | 44.23 | wind | 1.0 | 90 | < th | dose independent | rect. | 15 | 1 |
| 501 | 44.24 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 566 | 44.28 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 569 | 44.33 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 570 | 44.33 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 598 | 44.42 | wind | 3.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 617 | 44.49 | humidity | 60.0 | 10 | < th | dose independent | sin | 12 | NA |
| 618 | 44.49 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 664 | 44.65 | humidity | 60.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 677 | 44.70 | humidity | 60.0 | 10 | > th | dose independent | rect. | 14 | 12 |
| 678 | 44.70 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 681 | 44.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 699 | 44.74 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 707 | 44.76 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 3 |
| 731 | 44.79 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 747 | 44.87 | humidity | 60.0 | 10 | > th | dose independent | sin | 12 | NA |
| 786 | 44.89 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 793 | 44.90 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 852 | 44.96 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 860 | 44.98 | radiation | 20.0 | 10 | < th | dose independent | rect. | 14 | 12 |
| 873 | 45.00 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 874 | 45.00 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 877 | 45.00 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 881 | 45.00 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 890 | 45.00 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 891 | 45.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 913 | 45.00 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 916 | 45.00 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 930 | 45.01 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 10 |