Os10g0175500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0175500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.78 | 0.639 | 8.12 | 0.663 | 1.11 | 1.54 | 0.203 | 0.775 | -0.566 | 8.29 | 22.1 | 1490 | -- | -- |
| 186.19 | 0.636 | 8.1 | 0.911 | 1.1 | 1.52 | 0.262 | -- | -0.518 | 8.29 | 22.17 | 1500 | -- | -- |
| 184.88 | 0.633 | 8.12 | 0.671 | 1.11 | 1.54 | -- | 0.774 | -0.566 | 8.32 | 22.11 | 1500 | -- | -- |
| 186.29 | 0.636 | 8.09 | 0.921 | 1.1 | 1.53 | -- | -- | -0.506 | 8.32 | 22.14 | 1500 | -- | -- |
| 232.73 | 0.711 | 8.14 | 0.735 | -- | 1.51 | -- | 0.401 | -0.531 | -- | 22.2 | 764 | -- | -- |
| 270.59 | 0.771 | 8.21 | 0.353 | 1.09 | -- | 0.117 | -- | -1.01 | 8.48 | -- | -- | -- | -- |
| 270.64 | 0.77 | 8.21 | 0.357 | 1.09 | -- | -- | -- | -1.01 | 8.49 | -- | -- | -- | -- |
| 233.15 | 0.711 | 8.12 | 0.845 | -- | 1.48 | -- | -- | -0.5 | -- | 22.26 | 758 | -- | -- |
| 205.64 | 0.668 | 8.13 | -- | 1.15 | 1.3 | -- | -- | -0.622 | 8.15 | 22.4 | 1408 | -- | -- |
| 337.2 | 0.858 | 8.24 | 0.362 | -- | -- | -- | -- | -0.999 | -- | -- | -- | -- | -- |
| 274 | 0.774 | 8.22 | -- | 1.09 | -- | -- | -- | -1.05 | 8.47 | -- | -- | -- | -- |
| 245.79 | 0.73 | 8.14 | -- | -- | 1.35 | -- | -- | -0.555 | -- | 24.66 | 664 | -- | -- |
| 340.66 | 0.861 | 8.24 | -- | -- | -- | -- | -- | -1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 9 | 188.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 23 | 189.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 33 | 189.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 41 | 189.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 117 | 190.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 183 | 191.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 218 | 191.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 230 | 191.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 368 | 193.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 485 | 194.80 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 515 | 195.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 559 | 195.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 629 | 195.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 774 | 196.92 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |