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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0174800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF-like calcium-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0273) R2 : 0.238
β1 : 0.57 (0.108) R2dD : 0.0594 R2D : -0.0439
β2 : -- (--) R2dC : -- R2C : --
β3 : -7.9 (1.08) R2dE : 1.02 R2E : -1.61
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 80.6 (8.16) R2dD*E : 1.86 R2D*E : -0.814
γ1 : -0.0161 (0.0566) R2dN8 : 0.000197 R2N8 : -0.013
σ : 0.495
deviance : 113.09
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.81
memory length : 29
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21
open length of G : 0.648

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.81 0.499 3.16 0.558 0.0728 -7.83 0.395 80.3 -0.0187 4.33 24.93 30 21 0.733
196.95 0.654 3.17 0.218 0.116 -6.78 -0.937 -- -0.0717 3.76 25.8 32 22.8 0.667
112.94 0.495 3.16 0.563 0.0721 -7.91 -- 80.7 -0.0226 4.57 24.85 29 21 0.7
147.64 0.566 3.22 0.136 0.0482 -0.315 -- -- -0.00988 5.62 25.61 20 23.2 0.5
113.09 0.495 3.16 0.57 -- -7.9 -- 80.6 -0.0161 -- 24.81 29 21 0.648
146.75 0.568 3.22 0.133 0.08 -- 0.404 -- -0.0323 1.67 -- -- -- --
147.4 0.569 3.23 0.12 0.0804 -- -- -- -0.0347 1.85 -- -- -- --
147.32 0.568 3.22 0.131 -- -0.305 -- -- -0.0263 -- 24 10 23.8 2.28
146.08 0.566 3.23 -- 0.167 -0.343 -- -- -0.0521 1.22 18.7 2 23 3.16
147.79 0.568 3.23 0.123 -- -- -- -- -0.0328 -- -- -- -- --
147.77 0.569 3.23 -- 0.0826 -- -- -- -0.048 1.89 -- -- -- --
147.27 0.567 3.23 -- -- 0.332 -- -- -0.05 -- 22.16 5 1.03 3.45
148.19 0.568 3.23 -- -- -- -- -- -0.0465 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.63 temperature 25 30 > th dose dependent rect. 21 1
2 121.22 atmosphere 1000 10 < th dose independent rect. 21 1
9 121.22 atmosphere 1000 10 < th dose dependent rect. 21 1
29 124.85 temperature 25 30 > th dose independent rect. 21 2
58 129.44 radiation 40 90 > th dose independent rect. 15 1
75 129.44 radiation 40 90 > th dose dependent rect. 15 1
76 129.44 radiation 20 10 > th dose dependent rect. 16 1
158 129.88 radiation 20 10 > th dose independent rect. 16 1
325 131.58 humidity 60 10 < th dose independent rect. 14 2
327 131.64 wind 1 90 < th dose dependent rect. 15 1
359 132.63 atmosphere 1000 270 < th dose dependent rect. 18 4
394 132.78 humidity 60 10 < th dose dependent rect. 15 1
396 132.90 wind 3 10 > th dose independent rect. 21 2
436 133.48 wind 1 90 < th dose independent rect. 15 1
442 133.62 wind 3 10 < th dose dependent rect. 16 1
526 134.24 wind 3 10 < th dose independent rect. 16 1
533 134.46 atmosphere 1000 10 < th dose independent rect. 18 5
593 134.80 atmosphere 995 1440 > th dose independent rect. 17 10
659 135.16 humidity 60 10 < th dose independent sin 13 NA
676 135.21 atmosphere 1005 10 < th dose dependent rect. 16 1
678 135.26 humidity 60 10 > th dose independent sin 12 NA
685 135.32 wind 3 90 > th dose independent rect. 21 1
714 135.42 atmosphere 1005 90 < th dose dependent rect. 14 1
733 135.45 atmosphere 1005 10 < th dose dependent rect. 14 3
735 135.48 temperature 25 30 > th dose dependent rect. 21 8
750 135.67 atmosphere 1000 1440 < th dose dependent rect. 21 1
759 135.73 temperature 25 10 > th dose independent rect. 21 8
766 135.78 humidity 60 10 < th dose dependent sin 12 NA
791 136.04 atmosphere 995 1440 > th dose independent rect. 17 20
874 136.49 atmosphere 1000 90 < th dose dependent rect. 20 9
910 136.65 wind 1 10 > th dose dependent rect. 21 2
937 136.74 atmosphere 995 1440 > th dose independent rect. 17 15
938 136.74 wind 1 90 > th dose dependent rect. 21 1
977 136.80 atmosphere 995 1440 > th dose independent rect. 17 6
978 136.81 atmosphere 995 1440 > th dose independent rect. 17 3