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Os10g0170000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleotide-sensitive chloride conductance regulator family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.71 (0.0184) R2 : 0.818
β1 : 1.6 (0.0672) R2dD : 0.244 R2D : 0.201
β2 : 1.57 (0.0474) R2dC : 0.446 R2C : 0.409
β3 : -0.745 (0.0336) R2dE : 0.207 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0399) R2dN8 : 0.00426 R2N8 : -0.0229
σ : 0.341
deviance : 53.76
__
_____
C
peak time of C : 19
E
wheather : temperature
threshold : 21
memory length : 48
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.94 0.348 8.7 1.62 1.55 -0.711 0.00499 0.116 0.121 18.9 21 12 17 16.3
53.87 0.342 8.71 1.59 1.57 -0.723 0.0318 -- 0.109 18.9 21 43 16.9 16
54.36 0.343 8.71 1.65 1.56 -0.703 -- 0.148 0.117 18.9 20.94 28 17 16.5
53.76 0.341 8.71 1.6 1.57 -0.745 -- -- 0.114 19 21 48 16.8 16
82.2 0.422 8.66 1.5 -- -1.28 -- -0.355 0.166 -- 18.8 146 23.2 9.73
90.58 0.446 8.74 1.5 1.66 -- -0.107 -- -0.0647 17.6 -- -- -- --
90.6 0.446 8.74 1.5 1.66 -- -- -- -0.0652 17.6 -- -- -- --
79.41 0.415 8.67 1.62 -- -1.36 -- -- 0.0931 -- 18.86 128 23.4 9.5
121.2 0.513 8.75 -- 1.54 -0.637 -- -- -0.0803 18.8 21 28 16.9 16.3
234.2 0.715 8.71 1.44 -- -- -- -- -0.105 -- -- -- -- --
149.65 0.572 8.78 -- 1.64 -- -- -- -0.232 17.7 -- -- -- --
148.15 0.567 8.71 -- -- -1.28 -- -- -0.145 -- 16.38 239 23.3 9.51
289.16 0.794 8.75 -- -- -- -- -- -0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.66 temperature 20.0 10 > th dose independent rect. 17 16
4 57.87 temperature 20.0 90 > th dose independent rect. 15 18
15 59.65 temperature 10.0 270 > th dose dependent rect. 15 16
16 59.71 temperature 30.0 10 < th dose dependent rect. 20 10
18 59.84 temperature 30.0 270 < th dose dependent rect. 20 7
29 61.08 temperature 30.0 10 < th dose dependent rect. 22 8
42 62.01 temperature 15.0 10 > th dose dependent rect. 17 16
63 63.23 temperature 15.0 270 > th dose dependent rect. 2 5
159 65.74 temperature 20.0 10 > th dose dependent rect. 3 6
190 66.38 temperature 20.0 90 > th dose independent rect. 3 6
218 66.75 temperature 20.0 270 > th dose independent rect. 3 4
230 66.85 temperature 10.0 10 > th dose dependent sin 10 NA
233 66.87 temperature 30.0 10 < th dose dependent sin 10 NA
242 67.01 temperature 20.0 10 > th dose independent rect. 4 5
274 67.34 humidity 80.0 270 > th dose independent rect. 3 4
288 67.55 humidity 80.0 270 > th dose independent rect. 2 6
296 67.66 wind 9.0 270 < th dose independent rect. 7 8
326 67.88 precipitation 0.1 270 < th dose independent rect. 7 8
327 67.88 precipitation 0.1 270 < th dose dependent rect. 7 8
337 67.91 atmosphere 1015.0 270 < th dose independent rect. 15 16
352 68.07 temperature 10.0 270 > th dose independent rect. 7 8
353 68.07 atmosphere 1015.0 270 < th dose independent rect. 7 8
354 68.07 temperature 10.0 270 > th dose independent rect. 15 16
357 68.11 atmosphere 995.0 270 > th dose independent rect. 7 8
393 68.39 precipitation 0.1 270 < th dose independent rect. 19 8
395 68.39 precipitation 0.1 270 < th dose dependent rect. 19 8
397 68.42 wind 7.0 270 < th dose independent rect. 19 8
398 68.44 radiation 40.0 270 < th dose independent rect. 15 16
418 68.55 wind 9.0 270 < th dose independent rect. 7 20
429 68.64 radiation 1.0 270 > th dose independent rect. 7 8
437 68.70 precipitation 0.1 270 < th dose independent rect. 7 20
438 68.70 precipitation 0.1 270 < th dose dependent rect. 7 20
439 68.71 wind 9.0 270 < th dose independent rect. 15 16
447 68.75 wind 5.0 270 < th dose independent rect. 3 4
455 68.82 temperature 10.0 270 > th dose independent rect. 19 8
456 68.82 temperature 30.0 270 < th dose independent rect. 19 8
457 68.82 humidity 50.0 270 > th dose independent rect. 19 8
458 68.82 atmosphere 995.0 270 > th dose independent rect. 19 8
459 68.82 radiation 1.0 270 < th dose independent rect. 19 8
464 68.82 temperature 10.0 270 > th dose independent rect. 3 16
465 68.82 atmosphere 1015.0 270 < th dose independent rect. 3 16
466 68.82 humidity 50.0 270 > th dose dependent rect. 3 4
467 68.82 radiation 1.0 270 < th dose dependent rect. 19 8
486 68.93 wind 9.0 270 < th dose dependent rect. 3 4
524 69.26 temperature 10.0 270 > th dose independent rect. 3 4
526 69.26 temperature 30.0 270 < th dose independent rect. 3 4
527 69.26 humidity 50.0 270 > th dose independent rect. 3 4
529 69.26 atmosphere 995.0 270 > th dose independent rect. 3 4
530 69.26 atmosphere 1015.0 270 < th dose independent rect. 3 4
531 69.26 radiation 40.0 270 < th dose independent rect. 3 4
532 69.26 temperature 10.0 270 > th dose independent rect. 7 20
533 69.26 temperature 20.0 10 > th dose dependent rect. 21 12
554 69.37 temperature 25.0 10 < th dose dependent rect. 22 12
558 69.43 wind 9.0 270 < th dose independent rect. 8 18
561 69.45 radiation 40.0 270 < th dose dependent rect. 3 4
564 69.48 precipitation 0.1 270 < th dose independent rect. 3 4
567 69.48 precipitation 0.1 270 < th dose dependent rect. 3 4
571 69.49 humidity 50.0 270 > th dose dependent rect. 2 6
586 69.56 precipitation 0.1 270 < th dose independent rect. 8 18
589 69.56 precipitation 0.1 270 < th dose dependent rect. 8 18
603 69.66 precipitation 0.1 270 < th dose independent rect. 3 16
605 69.66 precipitation 0.1 270 < th dose dependent rect. 3 16
617 69.74 humidity 50.0 270 > th dose independent rect. 7 8
620 69.75 wind 1.0 270 > th dose independent rect. 7 8
621 69.75 precipitation 0.1 270 < th dose independent rect. 15 16
623 69.75 precipitation 0.1 270 < th dose dependent rect. 15 16
642 69.91 wind 7.0 270 < th dose independent rect. 2 6
652 69.96 humidity 80.0 270 > th dose independent rect. 4 1
656 69.97 atmosphere 1015.0 10 < th dose independent rect. 17 16
665 70.01 atmosphere 1015.0 90 < th dose independent rect. 17 15
669 70.04 radiation 40.0 270 < th dose independent rect. 2 6
670 70.04 wind 9.0 270 < th dose independent rect. 3 16
673 70.07 atmosphere 995.0 270 > th dose independent rect. 15 16
684 70.11 temperature 10.0 270 > th dose independent rect. 2 6
686 70.11 temperature 30.0 270 < th dose independent rect. 2 6
687 70.11 humidity 50.0 270 > th dose independent rect. 2 6
689 70.11 atmosphere 995.0 270 > th dose independent rect. 2 6
690 70.11 atmosphere 1015.0 270 < th dose independent rect. 2 6
691 70.11 temperature 10.0 270 > th dose independent rect. 8 18
693 70.12 humidity 50.0 270 > th dose independent rect. 7 20
710 70.17 temperature 15.0 720 > th dose dependent rect. 19 5
717 70.19 wind 9.0 270 < th dose dependent rect. 2 6
752 70.27 precipitation 0.1 270 < th dose independent rect. 2 6
757 70.27 precipitation 0.1 270 < th dose dependent rect. 2 6
839 70.60 atmosphere 995.0 270 > th dose independent rect. 7 20
843 70.61 temperature 25.0 10 < th dose dependent rect. 12 19
863 70.69 atmosphere 995.0 90 > th dose dependent rect. 9 19
883 70.73 radiation 40.0 270 < th dose dependent rect. 15 16
932 70.88 wind 5.0 270 < th dose independent rect. 4 1
943 70.89 wind 9.0 270 < th dose independent rect. 5 23
948 70.90 temperature 20.0 90 > th dose independent rect. 23 10
983 71.01 humidity 50.0 270 > th dose independent rect. 8 18
991 71.04 temperature 20.0 270 > th dose independent rect. 13 8