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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0167900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chalcone synthase J (EC 2.3.1.74) (Naringenin-chalcone synthase J).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0174) R2 : 0.00621
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.062 (0.0367) R2dN8 : 0.00801 R2N8 : 0.00621
σ : 0.328
deviance : 49.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.93 0.311 3.32 0.236 0.21 -0.229 -0.113 -0.879 -0.0617 7.24 70.27 4447 -- --
44.88 0.312 3.31 0.19 0.207 -0.279 -0.115 -- -0.0717 7.17 70.43 4368 -- --
43.97 0.309 3.32 0.234 0.209 -0.228 -- -0.882 -0.061 7.35 70.18 4447 -- --
44.88 0.312 3.32 0.178 0.201 -0.288 -- -- -0.085 7.35 70.96 4365 -- --
46.27 0.317 3.32 0.236 -- -0.238 -- -0.837 -0.0585 -- 71 4384 -- --
46.24 0.319 3.31 0.186 0.21 -- -0.115 -- -0.045 7.24 -- -- -- --
46.27 0.319 3.31 0.184 0.209 -- -- -- -0.0446 7.36 -- -- -- --
47.13 0.32 3.32 0.186 -- -0.304 -- -- -0.0799 -- 71 4336 -- --
45.73 0.315 3.32 -- 0.207 -0.298 -- -- -0.101 7.28 70.85 4365 -- --
48.6 0.326 3.32 0.187 -- -- -- -- -0.0412 -- -- -- -- --
47.16 0.321 3.32 -- 0.211 -- -- -- -0.0651 7.3 -- -- -- --
48.02 0.323 3.33 -- -- -0.308 -- -- -0.103 -- 70 4336 -- --
49.53 0.328 3.32 -- -- -- -- -- -0.062 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.93 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 41.06 atmosphere 1005.0 10 > th dose dependent rect. 2 2
9 41.82 precipitation 0.1 10 < th dose independent rect. 3 23
10 41.82 precipitation 0.1 10 < th dose dependent rect. 3 23
11 41.96 temperature 25.0 90 > th dose independent rect. 1 1
13 42.07 radiation 1.0 43200 < th dose dependent rect. 3 1
14 42.12 temperature 25.0 90 > th dose dependent rect. 1 2
19 42.26 atmosphere 1010.0 30 < th dose dependent rect. 2 1
20 42.27 radiation 1.0 4320 < th dose dependent rect. 3 1
27 42.34 wind 3.0 30 < th dose independent rect. 2 1
32 42.35 wind 7.0 30 < th dose dependent rect. 2 1
38 42.36 wind 9.0 1440 < th dose independent rect. 3 1
39 42.36 temperature 10.0 1440 > th dose independent rect. 3 1
42 42.36 temperature 30.0 1440 < th dose independent rect. 3 1
46 42.36 humidity 50.0 1440 > th dose independent rect. 3 1
55 42.36 atmosphere 995.0 1440 > th dose independent rect. 3 1
56 42.36 radiation 1.0 1440 < th dose independent rect. 3 1
76 42.36 temperature 10.0 1440 > th dose independent rect. 4 23
81 42.36 temperature 10.0 30 > th dose dependent rect. 2 1
97 42.37 temperature 10.0 30 > th dose independent rect. 2 1
100 42.37 temperature 30.0 30 < th dose independent rect. 2 1
101 42.37 humidity 50.0 30 > th dose independent rect. 2 1
104 42.37 humidity 90.0 30 > th dose independent rect. 2 1
105 42.37 atmosphere 995.0 30 > th dose independent rect. 2 1
106 42.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
108 42.37 radiation 1.0 30 < th dose independent rect. 2 1
113 42.37 precipitation 0.1 30 < th dose independent rect. 2 1
114 42.37 temperature 10.0 30 > th dose independent rect. 3 23
116 42.37 humidity 50.0 30 > th dose dependent rect. 2 1
123 42.37 radiation 1.0 30 < th dose dependent rect. 2 1
128 42.37 precipitation 0.1 30 < th dose dependent rect. 2 1
129 42.38 wind 1.0 30 > th dose independent rect. 2 1
135 42.39 temperature 30.0 30 < th dose dependent rect. 2 1
196 42.67 wind 9.0 30 < th dose independent rect. 3 23
199 42.70 humidity 90.0 90 < th dose independent rect. 2 1
211 42.90 humidity 50.0 30 > th dose independent rect. 3 23
213 42.95 atmosphere 995.0 720 > th dose independent rect. 23 16
218 43.00 humidity 80.0 4320 > th dose independent rect. 7 4
220 43.05 humidity 90.0 720 < th dose independent rect. 1 3
244 43.07 humidity 80.0 4320 < th dose independent rect. 7 4
247 43.11 humidity 80.0 14400 < th dose dependent rect. 3 6
277 43.28 atmosphere 995.0 720 > th dose independent rect. 7 8
281 43.32 humidity 70.0 4320 > th dose independent rect. 10 1
288 43.34 humidity 80.0 4320 > th dose dependent rect. 8 1
294 43.36 wind 1.0 14400 < th dose dependent rect. 6 1
310 43.42 humidity 70.0 4320 > th dose dependent rect. 3 8
312 43.43 radiation 10.0 4320 < th dose independent rect. 8 1
315 43.43 humidity 80.0 14400 < th dose dependent rect. 21 13
325 43.46 radiation 10.0 4320 > th dose independent rect. 8 1
354 43.52 humidity 90.0 90 < th dose dependent rect. 2 1
355 43.52 wind 1.0 14400 < th dose dependent rect. 4 4
359 43.53 wind 1.0 14400 < th dose independent rect. 4 4
372 43.56 humidity 90.0 720 > th dose independent rect. 3 1
394 43.59 humidity 70.0 14400 > th dose independent rect. 20 14
450 43.63 wind 1.0 14400 > th dose independent rect. 4 4
456 43.63 wind 1.0 14400 < th dose dependent rect. 2 6
468 43.64 humidity 70.0 4320 > th dose dependent rect. 10 1
469 43.64 humidity 50.0 4320 > th dose dependent rect. 11 2
485 43.66 wind 5.0 14400 < th dose dependent rect. 11 1
527 43.68 humidity 90.0 4320 < th dose dependent rect. 11 2
533 43.69 humidity 70.0 4320 > th dose independent sin 5 NA
568 43.71 wind 3.0 14400 > th dose independent rect. 19 1
592 43.72 humidity 90.0 4320 < th dose dependent rect. 3 10
624 43.74 humidity 90.0 90 < th dose dependent rect. 2 5
631 43.75 wind 1.0 14400 < th dose independent rect. 6 1
632 43.75 wind 3.0 14400 > th dose independent rect. 10 2
635 43.75 wind 9.0 720 < th dose independent rect. 19 8
659 43.77 wind 1.0 14400 < th dose independent rect. 2 6
678 43.77 wind 9.0 720 < th dose independent rect. 15 16
700 43.77 humidity 90.0 4320 < th dose dependent rect. 23 14
703 43.78 temperature 10.0 720 > th dose independent rect. 15 8
712 43.78 temperature 10.0 720 > th dose independent rect. 23 16
719 43.78 humidity 50.0 4320 > th dose dependent sin 5 NA
736 43.79 wind 3.0 14400 < th dose independent rect. 19 1
785 43.80 temperature 30.0 1440 > th dose independent rect. 14 21
786 43.80 temperature 30.0 1440 < th dose independent rect. 14 21
810 43.81 humidity 80.0 90 < th dose dependent rect. 24 3
829 43.82 humidity 70.0 4320 < th dose independent sin 4 NA
852 43.82 humidity 90.0 4320 < th dose dependent sin 5 NA
856 43.82 radiation 10.0 4320 < th dose dependent rect. 8 1
912 43.84 wind 5.0 14400 < th dose independent rect. 10 7
915 43.84 atmosphere 1000.0 10 > th dose independent rect. 21 23
939 43.85 wind 3.0 14400 < th dose independent rect. 10 2
943 43.85 temperature 10.0 720 > th dose independent rect. 3 8
944 43.85 atmosphere 995.0 720 > th dose independent rect. 3 8
960 43.85 temperature 10.0 720 > th dose independent rect. 11 16
976 43.85 humidity 90.0 10 < th dose dependent rect. 3 1
993 43.86 humidity 90.0 10 < th dose independent rect. 3 1